Microsatellites /Tandem Repeats database

Genome: Caldicellulosiruptor kronotskyensis 2002

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
21083GCAAAAGCAGTAAAAGCAGCAAAAGCAGCAAAAGCADesign primers
36523AGAAGACGAAGAAGAAAAAGAAAADesign primers
73082ATTTTATATCATTTTTTATTTTTTAATATCDesign primers
74447AAGTTAGGCTTGACAGGGTAGAAGAGAGGCTTGACAGGGTTGAAGAGAGACTTGACAGAGTAGDesign primers
74511AGAAAGACTTGACAGAGTTGAAGAAAGGCTTGACAGAGTGGAAGAAAGACTTGACAGGGTTGAAGAAAGACTTGACAGAGTTGAAGAGAGACTTGACAAAGTGGADesign primers
76643GA-AA-AA-GA-GA-AA-AA-CA-GA-GA-TA-AA-AA-GA-GADesign primers
76677TGAAGAAAAC-ATAAGAAAAC-ATAAGAAAACDesign primers
174925TTGACTTAAATTGGATTAAATTTACTAAAADesign primers
235139CAACTCAGCAGCAAACTCAACAGCAAACTCAGCAACDesign primers
255360TCCATTCTTTTTTCGAGGCTTTCAACTCTTTTTTCAAGGTTTTCAACTCTTTTTTCAAGGCTTTCAACTCTTTTTTCAAGACTTDesign primers
255445CAACTTTCTTTTCGAGACTTT-CAACTCTCTTTTCGAGGTTTT-CAACTCTCTTTTCGAGGTTTT-CAACTCTCTTTTCGAGGTTTTDesign primers
278535TAAGTTTTTTAAGTTTGTTCAGTTTTTDesign primers
412849TA-GA-AA-AA-AG-TA-CA-GA-AA-AG-TA-TA-AA-AA-AADesign primers
442874GAAGGAATACAGGAAGGTATACAGAAAGGTATACAGDesign primers
467398AGAGGCTTTGGCAGAGGTTTTGGCGGTGGCTTTGGCDesign primers
477444CTA-CTA-TTA-TTA-CTA-TTA-CTA-CTA-CTADesign primers
485881TAAAGGAAAAGGTAAAAGTATAGGDesign primers
519785CAACAAACTCAGCAAACTCAACAAACADesign primers
626115TGA-CGA-TGA-AGA-AGA-CGA-TGA-TGADesign primers
648661AAAGAAAAGGAAAGAAGAGAGAAGADesign primers
674038AGGTTCTGGTTCAGGTACACGTTCDesign primers
716895AA-TA-AA-AA-AT-TA-AA-AA-AA-TA-AA-AADesign primers
789569GGAGGTGGAGGAGGCGGTGGCGGTDesign primers
794968TATTAAAGAAGGTATTCAACAAGGTATTCAACAAGGDesign primers
864779AAAATTTAAGAAAATTAAAGAAAGATTAAGDesign primers
884725GATAAAAGAAGAGATAAAAAAATACATTAAAGAAGADesign primers
890100ATTTTAATTTTGATTTCATTTTTADesign primers
908456TGCAACAGCAACTGCAATTGCAAGDesign primers
926350CTTTTA-ATTTTA-ATTTTA-ATTTTADesign primers
926425CCCTGCGATTTTTTGTAGGTATATACTGCGATTTTTTATAGGTACATACTGCGATTTTCTGTAGGTATADesign primers
952673AAAGTAAACTAAAGCGAAGTAAAATDesign primers
957445TT-TT-CT-TT-TT-CT-TT-CT-CT-TT-TT-TTDesign primers
999000CGACAC-CGACGC-CAACAC-CAACAC-CTACAC-CTACACDesign primers
999039CACCAACTCCAACTCCAACACCGADesign primers
999096CAACAGTAACAGCAACACCAACACDesign primers
999635ACACCGACACCAACATCAACACCAACACCGACGCCGDesign primers
1000172ACACCA-GCACCA-ACTCCA-ACTCCA-ACTCCADesign primers
1000214ACCCCAACACCAACGTCAACACCAACCCCGACACCADesign primers
1003328CAACAC-CAACAC-CGACAC-CAACAC-CAACAG-TAACACDesign primers
1003880CACCGACCCCGACAGCGACACCGACACCTADesign primers
1003938AACACCAACCCCAACTCCAACCCCGACACCDesign primers
1004489CACCGACCCCGACAGCGACACCGACACCTADesign primers
1004572ACACCAACATCAACACCAACATCADesign primers
1007969CCAACA-CCAACA-TCAACA-GCAACA-CCAACA-CCGACA-CCCACA-CCAGCA-CCAACADesign primers
1008581ACACCA-GCACCA-ACTCCA-ACTCCA-ACTCCADesign primers
1008626CCAACACCAACGTCAACACCAACADesign primers
1009160ACACCA-GCACCA-ACTCCA-ACTCCA-ACTCCADesign primers
1009202ACCCCA-ACACCA-ACGTCA-ACACCA-ACACCG-ACACCADesign primers
1009267AACACCAACCCCAACCCCAACCCCGACACCDesign primers
1012376CAACAC-CAACAC-CGACAC-CAACAC-CAACAG-TAACACDesign primers
1012928CACCGACCCCGACAGCGACACCGACACCTADesign primers
1013028AACACCAACCCCAACCCCAACCCCGACACCDesign primers
1013579CACCGACCCCGACAGCGACACCGACACCTADesign primers
1013610TCCAGCACCAACTCCAACTCCAACGCCGGCACCAACDesign primers
1013653TCAACACCAACATCAACGTCAACACCAACATCAACGDesign primers
1017871CACCGACCCCGACAGCGACACCGACACCTADesign primers
1017936ACCCCA-ACACCA-ACGTCA-ACACCA-ACACCG-ACACCADesign primers
1018001AACACC-AACCCC-AACCCC-GACACCDesign primers
1018546CACCGACCCCGACAGCGACACCGACACCTADesign primers
1028340CCAACA-CCAACA-TCAACA-GCAACA-CCAACADesign primers
1028877CCGACAGCGACACCTACACCTACADesign primers
1028905CACCAACTCCAACTCCAACACCGADesign primers
1028962CAACAGTAACAGCAACACCAACACDesign primers
1029492CCGACAGCGACACCTACACCTACADesign primers
1029520CACCAACTCCAACTCCAACACCGADesign primers
1029577CAACAGTAACAGCAACACCAACACDesign primers
1038134CCAACAGCAACACCAACTCCAACCCCGACACCAAGACCAACGTCAACACCAACADesign primers
1109581ATGTCAG-ATGTCAG-ATGTTAG-ATGTCTGDesign primers
1182677AGAAGAGATGAGAAAAGAAGAGAATAGAAGAGATGAGAGGAGATGDesign primers
1186203TGAAAATGAATATGAAATTGAAAADesign primers
1293234TGAATTGGATGGAATTGAAAAGAATDesign primers
1763304GCAACTCTTTGCTCAACCATATCAAGTCTCTGCTCAACCATATCAAGTCTTTGCTCAATCTTADesign primers
1820442ATCCTTTTATCCTTTACTCCTTTTDesign primers
1838159TAATCTCTTCTCCTCTCTTCTTTTCTCTTCDesign primers
1922852CAAAAGCACAAGTAAAAGCACAAGDesign primers
1926008CAC-AAC-AAC-AAC-AAC-AAC-AAC-AACDesign primers
1927800ACAACAACAATAACAATAACAATADesign primers
1946533CTCTCACTTTCACCCTCACCCTCADesign primers
2138116ATGTTTTTATGTTATTATGTTTTADesign primers
2207640AAAGGAAAAGCAAAAGTAAAAGAADesign primers
2250880CT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TDesign primers
2343387AT-TG-TT-TT-TT-CT-TT-TT-TT-TT-TT-TT-TT-TT-TTDesign primers
2470084CGTTTCATACCTTGCTTCATACCTTGCTTCATACCTDesign primers
2495002AATAATTATAATAATAAAGATAATDesign primers
2505547CTTAAATTTT-CTTAAATTTT-CTTGAGTTTTDesign primers
2543498ATCAAGTCTTTTCTCTACCCTGTCAAGTCTTTCCTCTACTCTGTCAAGTCTTTCTTCTACTCTDesign primers
2634186AA-AA-AT-AA-AA-AA-AG-AA-AA-AG-AA-AA-ADesign primers
2722153AAAAATAAAAAAGTAAAAAAACAADesign primers
2791438CTTTAAAATTACTAACTTCAGAGTTACTAACTCTAAAGTTAATAADesign primers

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