Microsatellites /Tandem Repeats database

Genome: Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
9574TAATTTTTTTAAATTTTTTAAGTTTTTDesign primers
13627ATTTTTATTATTATTATTATTTTCDesign primers
26163ATATTTCTTTAATATTTTTTTTATTTTTCTCTADesign primers
41630TTTTTCTATTTCTTTTTTTTTGTCTTTTTGDesign primers
60559CTGCATCTTCATCTGTATCTGTATDesign primers
62693ATATAATTTTATAATTATAGAATTDesign primers
72011ATTTTTATTTATATTATTATTTTTDesign primers
121752AAAAAGAACAAGAAAAAAAAAAATDesign primers
121817AAAAAAAATCATATAAAATCAAAAATAAACDesign primers
161806CCACCAAAAATATCACCAAAAACATCCCCAAAAATADesign primers
172982TT-TT-TT-TT-AT-TT-TT-CT-TT-TT-AT-TT-TDesign primers
179623AAAATAATTTTTAAAATTTTTTTTATTATAATTTTTDesign primers
181882TAT-TAT-TAT-TTT-TTT-TAT-TAT-TATDesign primers
200913TTTTTTTATTTTTTCTATTTTTTCTDesign primers
211435TTTTTTTATAATTTTTTCTATTTCTTTATGDesign primers
215303AAATATAATTAAATATTTTTTTATATAATTDesign primers
232731TTTTTTATTTCTTTTTTTATTATTTTTTTADesign primers
238113TTTATTATATTTTTTTTTAGTTTTTDesign primers
285455TT-TT-AT-TT-TT-TG-AT-TT-TT-CT-AT-TTDesign primers
294983AAACTAAAAAAGAAACAAAAGAAGAAAATAAAATAGDesign primers
309714AA-AA-AA-CA-AA-AA-GA-AA-AA-AA-TA-AA-ADesign primers
314153TTATTATATTAATATATTATTATADesign primers
337572AATAATAAAAATAATAATAATAAGDesign primers
353040ATTATGAATATGATTATGATTATGDesign primers
358211ATAAATTAAAATAACATAAAAAAAADesign primers
367160TATAGAATAAATATTCTATAATAAATATTCTATAATAAATATTATATAATAAATATTATATAATAAATAADesign primers
369009TTAAAAAATTATAAAAAATATTAATATATTDesign primers
383314AATAAATAAAAATTAAAAAAATTAATTAAADesign primers
384748ATAATAAATATTATTATAAATATTATTAGAAATATTDesign primers
390637TTATT-ATATT-ATATT-TTATT-TTATTDesign primers
411151CGCTCGACC-TGCTCGACC-TGCTCGACCDesign primers
418836CT-CT-AT-TT-TT-TC-TA-TA-TT-TT-TT-AT-GT-AT-TT-TT-TDesign primers
429484AGATGGTGGAAATGGTGGAGATGGTGGDesign primers
435833ATA-AAA-AAA-AAA-TAT-TAA-AAA-AAG-AAG-AAA-AAADesign primers
435884AAAAAAAAATAAAATTAAAAAATAADesign primers
442149AA-AA-GA-AA-AA-CA-AG-AA-AA-AA-TA-GA-AA-ADesign primers
444224AAAAA-AAAAG-TAAAA-TAAAA-TAAAADesign primers
446235ATCAAATT-ATCAAATT-ATCAAAATDesign primers
470140AA-AA-AA-AA-AT-TA-AA-AA-AA-AT-AT-AA-ADesign primers
483577AAATTTATTAAAATCAATTATAAATTATTADesign primers
494949ATAAAAAAAAATAAGATAATATAATDesign primers
495591AAAGAAAAAAAAATAAAAAAAAATADesign primers
502788AAAAAAATAAATAAAAAAACAACAADesign primers
512962GT-TT-TA-TT-TT-GT-TT-TA-AT-AT-AT-TT-TT-TT-TTDesign primers
519948AGAAAAATAAAAAAATAAAAAAATDesign primers
526692AAAAAACAAATAAAACAAAAAAAATDesign primers
526977AAAATTAAAAAATTTAAAAATAAADesign primers
543766AAAATATTAAAAAAATATGAAAAAATTAGTAAADesign primers
561380TTATTAATATATTAATTTATTAAADesign primers
567997TTTTTTAAAAAATTTTTAAATATTTTTTTAAAADesign primers
608792TTTAAATAATTATAAATATTTTGAGATAATDesign primers
610668TATGAAAAAATATGAAAATCAATAAAAAAADesign primers
612859AA-TA-AA-AA-AA-CA-AA-AA-AA-TA-AA-AADesign primers
634147TTTTATTGTTTTATTATTTTTTTGDesign primers
640567TTTTTTGATATTTTCTTATATTTTTAGAAADesign primers

Please help us improve this resource by reporting problems, suggestions etc.