Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Nitrobacter hamburgensis X14

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
104963	ACACGG-ACACGG-ACACGG-ACACGG-ACACGG	Design primers
195662	CTCAGTCCAAGGCTTGTCAATCTAAGGCTTGTCAATCCAAGGCTG	Design primers
295999	GGC-GGC-GGC-GGC-GGC-GAC-CGC-GGC-GTC-GGC-GGC-GGC	Design primers
584037	ATTAGCG-AATAGCG-AATAGCG-AATAGCG	Design primers
676557	CGCCCGCGCACGCGCCAGCGCCAG	Design primers
688088	CCGGCGCCGGTGCCTGCGCCGGCA	Design primers
702746	TCGGCGGCTGGCGGCGGCGGTCGGCGGCGG	Design primers
734540	TCGCGATCACGACCGCGAGCGCGA	Design primers
805169	GCGGCGGCGCAGGCGGCGGCTCAAGCCGCAGCGCAG	Design primers
805217	GCTGCTGCTGCGCAGGCTGCCGCGACGCAGGCTGCTGCTGCCCGC	Design primers
809511	CAGCCGCAGCAGCAGCCACAACCG	Design primers
829411	CCGAAGCCGAAACCAAAGCCGAAG	Design primers
837286	CGCGCAGCGCCGCGAAGCGCAGCGC	Design primers
857753	CGGCGCCGCCGCCAGCGCCAGCGC	Design primers
862806	TGCCGA-TGCCGA-TGGCGA-TGCCGT	Design primers
978053	GGTGGCGGTGGTCGTGGCGGTGCC	Design primers
1042903	TGCGACTGCCGAGGGTGCAACGGCCGAGGGTGCAACGGCCGGGGGTGCAACGGCCGGGGG	Design primers
1058473	GCA-GCA-GCA-ACA-GCA-ACA-ACA-GCA	Design primers
1070886	TGAAAGCCACCACCATGGAAGCCGCTACCATGGAAGCCACCGCCGTGGAAGCCGCCACCC	Design primers
1134734	CCAAGCCTGCCCTCAACCAGCCTGCTCTCAACAAGCCCACCCTCA	Design primers
1154658	GGAATCGGAAGCGGAATCGGAAGC	Design primers
1158637	CACGCTCGCCACGCTCGGCAAGCTCGC	Design primers
1238622	GCGGCTGCGCCTGCGGATGCGGCG	Design primers
1248351	CGTCATCATCATCGGCATCATCAT	Design primers
1249216	AGTCCCCAAGGCACTCCACAAGGCACTCCACAAGGC	Design primers
1307282	TCATCCGTTATCATCCGTTGCCACCCGTTA	Design primers
1381287	CGGCCGCTTTGGTATCAGCCGGTTTCGTATCGGTCGCTGTCGTAT	Design primers
1389969	CCAAGAAGAAAACAGCCGCCAAGAAGAAAACAGTCGTCAAAAAGAAAACAGTCG	Design primers
1405565	GATCAGCCCGGTCAGCCCGATCAGCGC	Design primers
1423817	GACGCGGTCGCGGCCGCGGAAGCG	Design primers
1471672	TCGAAGCCATCTGCATTGAAGCCGCCTGCATTGAAGCCATCTGCA	Design primers
1485772	TGGCGC-TGGCGC-GGGCGC-TGGCGC	Design primers
1582223	CTGGCGCTGCTGGCCCTGCTGGCGATG	Design primers
1591083	ACCCAAGACGCA-ACCCAAGACGCA-CCCCATGACGCA	Design primers
1792242	TCATCCGTTACCATCCGTTGCTATCCGTTATCATCCGTTGCCACCCGTTA	Design primers
1803037	CCA-CAC-CAC-CAC-CAC-CAC-CAC-CAC-CAC-CAC-CAC-CAC	Design primers
1832916	GC-TC-CC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC	Design primers
1967678	CGTCACCGCACGTCGCCGGACGGCACCGCG	Design primers
1984629	TGG-TGG-TGG-GGG-CGG-TGG-CGG-TGG	Design primers
1991577	AGCGCCGCCAAGGCCACCGCTGCAAAGGCCACCGCCGCCAAGGGC	Design primers
2000030	GCCAAGGGCGAGCCGGCCAAGGGTGAACCAACAAAGGGTGAGCCG	Design primers
2006267	GGCGAGGGGAGCCGAGGTGAGGGGA	Design primers
2020044	GGCGC-GGCGC-GGCGC-GGCTC-GCCGC-GGTGC	Design primers
2086558	TCGATTCG-ACGATTCG-ACGATTCG	Design primers
2137745	TGGCGCTGGCACGGGCGCTGGCGC	Design primers
2244557	CGCCTTTGCCTTCTCCTTCACCTT	Design primers
2270742	CAGCGGAAGCGGCAGCGTCAGTGG	Design primers
2284656	GTCTCGGTATCGGTTTCGGTCTTG	Design primers
2393532	GTAACGCTGAAACGCTGAAACGCT	Design primers
2419360	GGTGGCGGTCATGGTGGCGGTGGTCACGGTGGCGGCGGTCATGGC	Design primers
2514827	GGCGCGCGCGCTGCTCGCGCGCGGCGACCGCGC	Design primers
2540582	CTTGCTCCTTGTCAGCTTGCTGCTTGCCAGCTTGCTCGTGGCCAG	Design primers
2540693	CCTTGGGCGTCTCGCCCTTGGCCGCCTCTCCCTTAGCCGTCTCGC	Design primers
2581154	CGGCCGCACCGGCCGCGCCGGCCGTAC	Design primers
2612517	CGCCGCGCTGCGCCTGGCCGCGCGG	Design primers
2630952	TTCGGCTTTGGCCTCGGCCTCGGC	Design primers
2663621	CGAAGGGCCTTCGAAGCCCCTTCGATGGGGCTT	Design primers
2663695	AGTGACTGTGACAGTGACAGTGGC	Design primers
2679868	CGGCAGCTGCAGCGGGAGCGGCAA	Design primers
2714341	TGGTCTGTCTTGACGGGATCTGTCTTGACGGGATCTGTCTTGGCG	Design primers
2812495	GGCGCTGGCGCGGGTGCTGGCGCC	Design primers
2834833	ATAGCCGTA-ATAACCGTA-ATAACCGTA-ATAACCGTA-ATAGCCGTA	Design primers
2835002	CCGCCGCCGTGAAATCCGCCACCGCCGTGGAATCCACCACCACCGTGGAATCCGCCACCACCGTGAAATCCA	Design primers
2980720	CGGCATCGGCTTCGGCCTCGGCTT	Design primers
3205789	TCCAGGAGCCGGTTGACCAGGCGCCGGCTGACCAGGCGCCGGCTG	Design primers
3212290	CACATCAGACCGGACAGCAGACCGGACAGCAGACCG	Design primers
3234378	CAACAG-TAACAG-CAACGA-TAACAG-CAACAG-CAACAG	Design primers
3411135	CCGCCGCCGCCACCACCGCCGCCA	Design primers
3424787	GCCGCA-GCCGCA-GCGGCA-GCCGCC	Design primers
3492456	CCAGCGGCGGCCCAACCAGCGGCAACCCAGCCGGCGGCGCCTCAA	Design primers
3498645	CATACGGCTTCCTGGCGTAAGGCTTCTTGGCATAGGGCTTCGTGC	Design primers
3518323	GATCAG-GACCAG-GACCAG-GATCAG	Design primers
3526902	CCGGCCCAAGCAAACCGGGCCCAAGTAAACCGGACCCAAGTAAAC	Design primers
3527666	GCGGATTTCTTGACGGACTTCTTGGCAGATTTTTTGGCTGATTTCTTGACGGACTTCTTGGCAGATTTCTTG	Design primers
3527756	TTCTTGGCGGATTTTTTGGCGGATTTCTTCGCCGAT	Design primers
3527845	TTTCTTCGCAGCTTTCTTTGTAGCTTTCTTCGCCGA	Design primers
3529850	GCCTCGAGCCGA-GCCTTGAGCCAA-GCCTTGAGCCAA-GCCTTGAGCCAA	Design primers
3533754	GCGCGGCGCCGCGCCGCGAGGCGCT	Design primers
3547659	TGTCCGCGCCCGACTTGGCCGCCCCCGATTTGGCCGCCCCCGACC	Design primers
3581568	AGGCGTCAAGAAACTGGGCGTCGAGAAACCGGGCGTCGAGAACCT	Design primers
3689653	CCCTTA-CCCTTA-CCATTA-CCATTA-CCCTTA	Design primers
3735287	ACCACTTCG-GCCACTTCG-GCCACTTCG	Design primers
3763761	GTTGTCGTTGGCGTTGCCGTTGTC	Design primers
3772712	ATGATC-GTGATC-GTGATC-GTGATC	Design primers
3796926	GTTCATGATCATGTTCGTGATCATGATCAT	Design primers
3819285	ACCATGATCATGATCATGACCACG	Design primers
3822868	CATTCG-CGTCCG-CGTCCG-CGTCCG-CGTCCG-CGTCCG	Design primers
3847639	GGC-AGT-GGT-GGT-GGT-TCC-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT	Design primers
3861314	CGGCTGCAACTGCTGCAACTGCTGCAA	Design primers
3903433	CGTTGTCTTGCAG-CGTTGTCTTGCAG-CGTCGCCTTGCAG	Design primers
3925471	AGGCCAAGGCGGAGTCCAAGGGGGAGTCCGAGGCGG	Design primers
3943254	GTGGCGATGATGCCCCTGGTGACGATGCCCACGGTGATGATGCCC	Design primers
4025730	CGTTTTCTGTGCTTCTTCTGTGCTTCTTCTGTG	Design primers
4057667	TCACTGCC-GCACTGCC-GCACTGCC	Design primers
4067175	GCTGCCGCGCTGGCGCGGTGCCGC	Design primers
4157560	CC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC	Design primers
4243184	CGACCACTGCGCCAGACATCACCCTGAACTGCGCCAGACATCACCCAACGCTGCGCCAGACATCACCCTGTACTGCGCCAGACATCACCCAGCGCTGCGCCAGACATCAC	Design primers
4358483	GTATATTGG-TTATATTGG-TTATATTGG	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

104963

ACACGG-ACACGG-ACACGG-ACACGG-ACACGG