Microsatellites /Tandem Repeats database

Genome: Campylobacter jejuni subsp. jejuni IA3902

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
41AAACGA-AAACGA-ATACGA-AAACTADesign primers
38802CAAATACTTATATAAATACTTACACAAATATTTATADesign primers
60652CAAAGACTTAAACAAAGATTTTAATAAAGAGTTAAADesign primers
245601AATATTTTAAAATATTCTTAAAAATTTTAADesign primers
279759AA-AG-AC-TA-AA-AA-GT-AC-TA-AA-AA-AG-AA-AA-AADesign primers
310433TTTTTAATTTTACTTTTAATTTTADesign primers
328776ATAAAAATAGAAATAAAGATAAATDesign primers
329235TTTCTGTTTCTTTGTCTGTTTTTGDesign primers
358982TAAAAAGTTAAAAAATAAAAAAGTDesign primers
500701TTTATTTAGCAATGTATTTTGCAAATCATTTAGCAADesign primers
534968ACAAATGGAAGAAATGGAACAAATGGADesign primers
587567TTTTGATTTTTATTTGGATTATGADesign primers
699619CAAATACTTATATAAATACTTACACAAATATTTATADesign primers
748191AAAGTAAAGAGAGTAAAGAAAGTAAAGDesign primers
769000AAAGTAAAGAGAGTAAAGAAAGTAAAGDesign primers
771249TT-TT-TT-TT-GT-TA-TT-TT-TG-TT-TT-TA-TDesign primers
776595TT-TA-TT-TT-TA-TC-TC-TA-TT-TT-TA-TTDesign primers
800417TTTTTTAAAGTATTTTCAAGTTTTTCAAAGDesign primers
819122ATAAACTAAAAAAAATTAAAATACADesign primers
836796TTTTTTTATTTTTGTTAATTTTTTTTAAATDesign primers
878636AACTTTAGCTTTAACTTCATCTTTDesign primers
886268CATTTAAAAACATTTCTAAACCTTTATAAADesign primers
887350AAAATTTTTCTAAAGTTTTTTTAAAATTATTTTDesign primers
919337TAATTATACTTAAAATTATAAATADesign primers
959044TTCTTTTTTTTCATTTTTTTTGCTTTTTTTDesign primers
978038AATAATAACAATAATAACATTAATDesign primers
999524TTTTTTTTTCTTTTTTTGCTTTTTDesign primers
1004469AAAATTTTCAAAAAATTTTAGAAATTTACADesign primers
1020500TTTTTTTCTTGTTTTTTGTTTTTCTTTTTGDesign primers
1048577TTAAATTTTCAATTTTAAATGATAAATTDesign primers
1056456AA-AA-AA-AT-AA-AA-AA-TA-AG-AA-AA-AA-AC-AA-AADesign primers
1108995TTTATA-TTTATA-TTCATA-TTCATADesign primers
1141933AAGCCAAAGCTAAAGCCAAAGCTADesign primers
1162558GGTTTTGGAGGATTTGGAGGTTTTGAADesign primers
1261718AAAAGAAAACACAAGCAAAGAACAGDesign primers
1349243TTTGTTTTTATCTCTTTTTATTTTTTTATADesign primers
1373483CCGCAATTTTAACAT-TATCAATTTTAACAT-TATCAATTTTAACAT-TATCAATTTTAACAT-TATCAATTTTAACAT-TATCAATTTTAACATDesign primers
1375077TT-TA-TT-TT-TT-TT-AT-AT-TT-AT-TT-TT-TT-TT-AT-TT-TDesign primers
1395277AAAAAACAAAAAAAACTAAAGAAACAADesign primers
1450657AAAAAATTTAAAAGAATTAAAAGAAATTTTDesign primers
1527740AAATTTAGATTTTAATTTAAATTGDesign primers
1572719TATAATTTAATATCATATCATAGAADesign primers
1577825TACAAACACAAATACCAATAAAAADesign primers
1586097GCGATGCAA-ACGATGCAA-ACGATGCAADesign primers

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