Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Bacillus anthracis str. H9401

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
9190	ATAATATACTATGATATATTATAAA	Design primers
155865	AATAATCAA-GATAATCAA-GATAATCAA	Design primers
202541	ATATAATTAATTATAACTAAATATAACTAAATATAACTAGTTATAATTGAATATAATTTG	Design primers
220776	GATTTATAAAGAGCTGTATAAAGAGCTGTATAAAGA	Design primers
406738	CTGCCACCAGAACCACTGCCACCAGAACTGTTGCCACCCGAGCCATTGCCACCAGAACCGTTGCCGCCAGAACCA	Design primers
406924	CCAGAACCGTTGCCGCCAGAACCATTTTCGCCAGAACCGTTGCCACCAGAACCGTTGCCA	Design primers
407014	CCAGAACCGTTGCCGCCAGAACCATTTTCGCCAGAACCGTTGCCACCAGAACCGTTGCCA	Design primers
409412	GGCGAAGGTGAAGGCGATGACGAA	Design primers
445202	AATACAGAGAATACTACAAAGAATACTACAGAGAAT	Design primers
538347	GAAAAAGCAAAAGAAAAAGGAAAA	Design primers
554664	AGAAAAAGATAAAGATAAAGAATA	Design primers
632851	ATCATCATGATCACCATCATCATC	Design primers
633024	TATCCAGCGCCATATCCAGTGCCATATCCAACACCA	Design primers
742219	TGTTTGAGTTTGTGATTGCGTTTG	Design primers
774776	GAAAATTAAAATGATAATGAAAAA	Design primers
803065	AGCTGCTTCTTGAGCTTTAGCTTCTGCCTGAGCTTTAGCTGCTTCACGAGCTTTAGCTGCCTCTTGAGCTTTAGCCGCTGCTTGAGCTTCAGCTGCTTCTTGAGCTTTAGCTTCTGCCTGAGCTTTAGCTGCCTCTTGAGCCTTAGCTGCTTCACGAGCTTTAGCCGCTGCTTGAGCTTCAGCTACTTCGCGAGCTTT	Design primers
823999	AAAGAAGTGGACAGAAGGGGAAAGAACTGT	Design primers
871426	CAGAGAATCCAGGCGAAGAAACAGAAAAGCCAGGTGAAGAAACAGAAAAGCCGGGTGAAGAAACAGAAAAGCCAGGCGAAGAAACAGAAAAGCCAGGTGAAGAAACAGAAAAGCCAGGTGAAGAAACAGAAAAGCCAGGCGAAGAAACAGAAAAGCCAGGTGAAGAAACAGAAAAGCCAGGCGGAGAGA	Design primers
935638	ATAACA-AAAACA-AAAACA-AAAACA	Design primers
965983	TTTTTATTTATTTTCATTTCATTTTTTTTA	Design primers
1120239	TAATTTATAATAATTTTAAATAAATAATAA	Design primers
1174041	GGCCCAGTCGGTCCAGTCGGTCCAGTC	Design primers
1174079	ACCAGTTGG-CCCAGTTGG-TCCAGTTGG-TCCAGTTGG-CCCAGTTGG	Design primers
1174140	TCTCCAGTT-GGCCCAGTT-GGTCCAGTT-GGTCCAGTT-GGTCCAGTT-GGCCCAGTT	Design primers
1174214	TCCAGTTGGCCCAGTTGGTCCAGTTGG	Design primers
1174242	CCAGTCGGCCCAGTCGGTCCAGTCGGC	Design primers
1182274	CAA-CAA-CAA-GAA-CAA-GAA-CAA-GAA-GAA-CAA	Design primers
1205643	TTTCGGTTCTTTTGGTTCTTGCGGTTC	Design primers
1244714	TTCTTCAGCAGGTTTTTGCTCAGCTGGTTTTTGTTCAGCAGGTTT	Design primers
1244810	TTCAGCAGGCTTTTGCTCGGCAGGTTTTTGCTCAACAGGCTTTTG	Design primers
1334291	AAATGAAAAAGAGAATGAACATGA	Design primers
1421082	AAATATTT-AAATATTT-AAGTATTT	Design primers
1422841	AAAAATAAAATAAAAACAAAAAGAA	Design primers
1451555	ATA-TTA-TTA-TTA-TTA-TTA-TTA-TTA-TTA-TTA	Design primers
1471755	TTGTTGTTGTTCTTGCTGCTGTTG	Design primers
1477807	CAACAGCAACAACCACAGCAACCG	Design primers
1504095	AATATTAAAAAATGTTACAATACATTAAAA	Design primers
1572718	TTTTTTTGTATTCTTTTTTATATTTTTATA	Design primers
1582583	TCTTAAAAAGTTTTTAAAAGCCTTAAAAAG	Design primers
1591642	AGAATTATGAAGAAATGTGAAGAAATATGG	Design primers
1656540	TATTAAATTATATTTAAATAAGTTAAATTA	Design primers
1656674	ATAAGAATCTATAAAAAACTATAAAAATTT	Design primers
1672054	TTGTAGGTTTTTGTATGATTTTGTAGGTTC	Design primers
2040954	AGTGGATCCAAAGCCGCCAGTGGTAGAACCAAAGCCACCAGTGGTAGATCCAAAACCGCCGGTAGTGGATCCGAAGCCACCAGA	Design primers
2149126	AGAGATGTAGCGATGTAGCGATGT	Design primers
2153568	TTGCAAACCAAACTGCAAACAAAAATGCAAACTAAA	Design primers
2161197	ATGAAAATAAAAATAAAAATGGAA	Design primers
2169810	AAA-AAG-CAA-GAA-GAA-TTA-AAA-AAA-CAA-GAA-GAA-CTT-AAA-AAA-CAA-GAA-GAA-GAA	Design primers
2169888	CAGGAAGAACAAAAGAAACTAGAAGAGCAAAAGAAACAAGAAGAAGAAAAGAAA	Design primers
2172525	TTAAAGATAAGTAAAGAGAAGTAAAGAGAA	Design primers
2270433	TGGGACCAGTAAAGCCTGTGGGACCAGTGATGCCTGTGGGACCGGTGATGCCTGTAGGACCAGTGATGCCTG	Design primers
2372623	AAAGATAAAAATATAAAACGATAA	Design primers
2470724	ATAATTATGAATATGATTACGAATTTAATTATGACT	Design primers
2556304	ATCATCTAATGG-ATCATCTAATGG-ATCAACTGATGG	Design primers
2578848	TAATTCCAATTACAATTCCAATCACAATTCCGATTA	Design primers
2636798	ATAAATATAAACATGAATATAAAT	Design primers
2880614	TCATTTTTTATTTGGTTTTTTATTTGGTTTTTTATT	Design primers
3096524	AAACACAACAAAACCAACCAAAACA	Design primers
3108124	TT-AT-AT-TT-TT-AG-AT-TT-TT-GT-AT-TT	Design primers
3152063	GAAGAATCTGTT-CAAGAATCTGTT-CAAGAATATGTT	Design primers
3329527	TT-AT-CT-TT-TT-AT-CA-TT-TT-AT-CT-CT	Design primers
3404346	TATCAACATCAATAGCAATAACAA	Design primers
3505586	AGGACCTAC-TGGACCTAC-TGGACCTAC	Design primers
3510928	TTTTCATTTTCT-TTTTCATTTTCT-TTTTCATTTTCT	Design primers
3540036	ATAAGAAATTAAAAAAAATTATAAAAAATG	Design primers
3584466	TTGTTCCTCTTTCTTCGGTTCTTCTTTCTTTGGTTCCTCTTTTTT	Design primers
3698969	AATCTTCAAACCTTCAAATCTTCC	Design primers
3745854	TGTTTCTTT-TGTTTCTTT-TGCTTCTTT	Design primers
3753782	TCTTTCTGTTTCTCTGTCTCTTTT	Design primers
3762847	AAATAGTTCACAAATAGTCCGCAAACAGTTCGC	Design primers
3765096	TTTTTCTTTTCTTTTTTTCTTATTTTTCTT	Design primers
3821179	CAAGTGCAAGTCCAACTGCAAGTC	Design primers
3843212	TCACAACCACAATCTCAATTACAA	Design primers
3886587	TTAACATTTTTTGAACATTTATTGAACTTTTTT	Design primers
3968222	TGCTCTGCAACTTGCATTGCAACTTGCTCTCCAATT	Design primers
4094128	CCAATATCGACA-GCAATATCAACA-ACAATATCAACA-ACAATATCAACA-ACAATATCAACA	Design primers
4094563	ACA-AAA-AAA-AAG-AAA-AAG-AAA-AAG-AAA-AAA	Design primers
4223468	CTTCTTCTTCATCCTCTTCTTCTG	Design primers
4224781	TGCACTTCTTTTTGCGGTTTCACCTGCATTTCCTTCTGCGGTTTTACCTGTACTTCTTTTTGTGGTTTCACT	Design primers
4310606	GAATAAAAAGAATAAACAGAATAAACA	Design primers
4322841	CTCCCGTTGGACCTGTCGCTCCCGTTATTCCTGTCGCTCCCGTTGGACCCGTTG	Design primers
4322976	CTCCCGTTACTCCCGTTGCTCCTGTTGCTCCTGTTGCTCCTGTTGCTCCCGTTA	Design primers
4323038	GCTCCCGTCGGACCTGTTGCTCCCGTTGGACCCGTTGCTCCCGTTGCTCCTGTT	Design primers
4323113	CCCGTTACTCCCGTTATTCCTGTTGCTCCTGTTATTCCTGTCGCTCCCGTTATT	Design primers
4323173	GCTCCTGTTACTCCCGTTACTCCCGTTACTCCTGTTGCTCCTGTTGCTCCCGTT	Design primers
4342142	CATGGTTGTTGTTTCCACCTTGGTTATTGTTTCCGCCTTGGTTGTCGTTTCCGC	Design primers
4342594	TTTTCATCTGGTTTT-TCTACTTCTGGTTTT-TCTACTTCTGGTTTT-TCTACTTCTGGTTTT	Design primers
4353096	ATAAAAATAACAATATAAAAAAAA	Design primers
4387159	CTTTATTTCTTTGTTTCTTTGTTT	Design primers
4422792	TATTCTCTTATGCTCTTGTTCTCT	Design primers
4477295	ACCGGTGCTTCTTCTGCAACTGGTTGTTCTTCTGCAATCGGTGTTTCTTCTACA	Design primers
4509639	TCCTGTTACTCCCGTACTTCCTGTTACCCCGGTGCTTCCTGTTACCCCAGTACTTCCTGTTGCTCCCGTGTT	Design primers
4509733	GTTCCTCCCGTTTCTCCCGTTTCTCCC	Design primers
4510178	TTCCTGTTACCCCGGTGCTTCCTGTTGCCCCTGTACTTCCTGTTACCCCAGTAC	Design primers
4510259	GACCCGTACTTCCTGTTACCCCAGTACTTCCTGTTACTCCCGTACTTCCTGTTA	Design primers
4510431	TCCCGTTGCTCCCGTTTCTCCCGTTGG	Design primers
4518813	TGTTGTTGATATTGTTGATATTGTTGA	Design primers
4518869	GTGTTGACCGTGGTGGCCTTGATGACCGTGGTGACCGTGATGATCATGGTGGCC	Design primers
4590049	TTAGAAAAAGGT-ATAGAACAAGGT-ATAGAGCAAGGT-ATAGAGCAAGGT-ATAGAACAAGGT-ATAGAACAAGGT	Design primers
4679225	CTTTTA-CTTTCA-CTTTCA-CTTTAA	Design primers
4679611	ACTTTTACTTCTTCTTTTACTTTTACTTTA	Design primers
4906324	TATCTTCTTTTTTAGGTGCTTCTTTTTTAGGCTCTTCCTTTTTAGGCTCTTCTTTTTGAG	Design primers
4938202	TAAATTTTTATAGTTTTTTATAGATTCTTA	Design primers
4955940	AAATT-TTATT-TTATT-TTATT-TTATT-TTATT	Design primers
5023078	GCCTTCGCTTTCGCTTTCGCCTTT	Design primers
5136712	TTTCTTCTCTTTTATATTCTTTTCT	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

9190

ATAATATACTATGATATATTATAAA