Microsatellites /Tandem Repeats database

Genome: Halalkalicoccus jeotgali B3

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
47752GCCGCCCAT-GCCGCCCAT-ACCGCCCAT-GCCGCCCATDesign primers
77693GGCGACGGCGTCGACGACGGTGACDesign primers
152355CGTTCGCGTTGGCGCTCGCGTGCGDesign primers
170182GACGACGATGACGACGAGGACGAGDesign primers
225620ACCGGCGGAACGGCGGACCGTCGGDesign primers
232101CTCGCCGAGCTCGCCGAACTCGGCGAGDesign primers
271592CGACCCGTTCGATCCGTTCGACCCGTTDesign primers
354003GTCGGACGACTCGGACGAGTCGGACGTDesign primers
370532CGCCGAGGCCGAGGCCGACGCCGCDesign primers
419308GTCGCGTCCCGTCGAGTCGGGTCGCDesign primers
456024GAGGATCGGCATGAAGATCGGCACGAGGATCGTGATDesign primers
501993ACGACCACCACCACGATCACGACGDesign primers
564394ACTGGAATCAGTCGATTCAGTGGAATCAGTCGATTCAGTGGAATCAGTGGAATCDesign primers
580452ACCATCATCGCCGTTGCCACCGTTATCGCCGTTGCCACCGTTATCACCGTTGCCDesign primers
735923GCCGCCCAT-GCCGCCCAT-ACCGCCCAT-GCCACCCATDesign primers
736002TCG-TCG-TCG-CCG-CCG-TCG-TCG-GCGDesign primers
775519CCACGACCCCGACCACGCCCGCGADesign primers
803215GCGCTCGCGGTCGCGTTCGGGCTCDesign primers
856061CGA-CGA-CGA-CGA-CGA-AGA-CGA-GGADesign primers
875286CGTGGCCCGCGTGGTCCGCGTGGTCCGDesign primers
988490ATCGAA-CTCGAA-CTCGAA-CTCGAADesign primers
1021535CCTGATCCTGACGCTGATTCTGATDesign primers
1064147GACCCCGAGGATCCCGAGGACGCCGAGDesign primers
1092345GCCGCCGGCGCCGACGCCGCCGCGDesign primers
1105556CGTCGGCGTCGTCGCCGGCGTCGGDesign primers
1144702GAAGTC-GTAGTC-GTAGTC-GGAGTCDesign primers
1239751TCGACGGCC-TCGACGGCC-TCGACCGCCDesign primers
1262337TCGGCGGCGGCGTCGCCGTCGGCTDesign primers
1271049GACCGC-GACCGC-GACGGC-GATCGCDesign primers
1333541GAGACCGAAACCGAGATCGAGACCDesign primers
1342670CGACGTCGACGAGGACGTCGAAGTDesign primers
1344129ACATCTACATCAATATCTACATCADesign primers
1363748CCTCGCCGACCTCGACGACCTCGCCCADesign primers
1367601CCGCGGGGACTGCGGGGACCGCGTGGADesign primers
1367855GGGGACGACGGGGACGATGGCGACGACDesign primers
1396618ACGTCGTCGTCGACGACGACGTAGCCGTCGDesign primers
1544212GAACGTC-GAACGGG-GAACGGG-GAACGGG-GAACGGG-GAACGGGDesign primers
1563210GGTCGAGGACGAGGCCGAGGGCGADesign primers
1581202CGAGGCCGA-CGAGGCCGA-CGAGGGCGADesign primers
1581263GAGGACGACGACGAGGACGAGGGCDesign primers
1588511ATATTGATATAGACATTGATCTTGDesign primers
1705162CGGCGGCGGGGGAGGCGGCGGCGADesign primers
1746826ACG-TCG-ACG-TCT-TCG-TCG-ACG-ACGDesign primers
1775755GTC-TTC-GTC-GTT-TTC-GTC-GTC-CTC-GTCDesign primers
1788187CGCGCTCGCGCGCTCGCTCGCGCCDesign primers
1818386GCGTCGGCCGCGTCGGTCGCGTCCGCCDesign primers
2036232GTG-GGG-GCG-GTG-GCG-GCG-GCG-GGG-GCG-GCG-GGG-GCGDesign primers
2096653TCGTCTCGCTCGTCGCGCTCGTCACGCDesign primers
2175462GTC-CTC-GTC-GTC-CTC-CTC-GTC-GTC-GTCDesign primers
2203095GGACCGAGACCGGAACCGGGACCTDesign primers
2228121CGGCCGTCCGGTCGTCGGGCCGTCDesign primers
2243967GAACCCGAACCGGAGCCCGAATCCDesign primers
2331047CGGCGGTCCCGGTGGTCCCGGCGGCCCGGGCGGTCCDesign primers
2352748ACGACGACGCCGGCGACGACGAAGACGGCGDesign primers
2495781GCGTCGGCGGCGGCGTCGGCGTTGDesign primers
2496623CTCGCCGGG-CTCGCCGGG-CTCGTCGGG-CTCGTCGGGDesign primers
2517178ACGACG-ACGACG-ATGACG-ATGACG-ACGACG-ATGACGDesign primers
2639901GCGGAGATCGACGCCCAGATCGACGCGGTGCTCGACDesign primers
2751846TCGTCGTCGGCGTCTTCGTCCTCGDesign primers
2767252ACGACCACGAGCACGAACGCGACCDesign primers
2792433GACGCGGTCGCGGCCGCGGAGGCGDesign primers
2806676GTCGCGACCGTCGCGATCGTCGCGACGDesign primers

Please help us improve this resource by reporting problems, suggestions etc.