Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Bacillus thuringiensis serovar finitimus YBT-020

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
9191	ATAATATACTATGATATATTATAAA	Design primers
210929	ATAATTAATTATAACTAAATATAAATAAATATAACTAGTTATAATTGAAT	Design primers
400953	GACAAA-AAGAAA-AAGAAA-AAGAAA-AAGAAA-AAGAAA	Design primers
527495	CAGAGCCATTACCACCAGAGCAATTGCCGCCAGAACCGTTGCCACCAGAGCCGTGGCCACCAGAACCATTGCCAC	Design primers
527593	TTGCCATCAGAACCG-TGGCCGCCAGAACCG-TTGCCACCAGAGCCA-TTGCCACCCGAACCA-TTGCCACCAGAACCA-TTGCCACCAGAACCA-CTGCCATCAGAGCCA-TTGCCACCAGAACCG-TTGCCACCAGAACCA-TTGCCACCAGAACCC-CTGCCATCAGAGCCA-TTGCCACCAGAACCG-TTACCACCAGAACCA	Design primers
527864	TGCCATCAGAGCCATTGCCACCCGCGCCATTGCCACCCGAGCCATTGCCACCAGAACCACTGCCATCAGAGCCATTACCATCAGAACCGT	Design primers
527975	CGGAACCATTGCCGCCAGAACCATTGCCATCAGAACCGTTGCCAC	Design primers
622961	GAAAAAGCAAAAGAAAAAGGAAAA	Design primers
631342	CCAAAAGAAGAAGTAAAAGAGCCAACAAAAGAAGTTGAAGAGCCAAAAGAAGAAGTAAAAGAA	Design primers
707692	CTT-TTT-CTT-CTT-GTT-TTT-CTT-CTT	Design primers
709313	TAAATAAAAAGAAAATAAAACGAAAATAAAACG	Design primers
724978	ATCATCATGATCACCATCATCATC	Design primers
725151	TATCCAGCGCCATATCCAGTTCCATATCCAACACCA	Design primers
809536	TCTGCTTCTGCATATGCTTTTGCT	Design primers
867132	AGCGCCTCCAATTGCGCCGCCAATAGCGGCTGCAAT	Design primers
887037	ACAA-ATAA-ATAA-ATAA-ATAA-ATAA	Design primers
904055	TTGAGCTTTAGCCGCTTCACGAGCTTTAGCTGCTTCTTGAGCTTTAGCTGCTTCACGAGCTTTAGCTGCTTC	Design primers
904134	TTAGCTTCTGCTTGAGCTTCAGCTGCTTCTTGAGCTTTAGCTTCTGCCTGAGCT	Design primers
933108	AA-AA-GA-AA-TG-AA-GA-GA-AA-AT-AA-AA-A	Design primers
1023169	AAGAGCAGAAAAGAGTAGTAAAGAGCAGCA	Design primers
1126381	GGAAAAGCCACATGTGGAAAACCCAGAAGTGGAAAAGCCAGATCT	Design primers
1133632	TTGATAAAAAATAGATAAAAAGTTGATAAGGAA	Design primers
1140187	AAAAAATAGAAAGGAATAGAGAAAAATGGA	Design primers
1144971	GGTGTTGCTGTTGGTGTAGGTGCT	Design primers
1260371	TTGAAAATCGCTGATATATTTTGAGTTGCGCTGATATATTTGAAAAATCGCTGATATAAT	Design primers
1298807	TAATTTATAATAATTTTAAATAAATAATAA	Design primers
1305739	GATAAAAATATAAAAAGTTAAAAA	Design primers
1354241	TCCAGTCGGCCCAGTCGGTCCAGTCGG	Design primers
1354269	CCAGTTGGTCCAGTCGGTCCCGTTGGT	Design primers
1386993	TTTCGGTTCTTTTGGTTCTTGCGGTTC	Design primers
1416945	TTTTGAACGTTTATGTACGTTTTTGAAAGA	Design primers
1427088	TTCAGCAGGCTTTTGCTCAGCTGGTTTTTGTTCAGCCGGTTTTTG	Design primers
1427178	TTCTTCAGCAGGCTTTTGCTCAGCAGGCTTTTGCTCGGCAGGCTT	Design primers
1567239	GAAGA-AAAGA-AGAAG-AGAAG-AGAA	Design primers
1568656	TCCAGTAGCACCAGTAGCGCCAGTAGC	Design primers
1569178	TCCAGTAGCACCAGTAGCGCCAGTAGC	Design primers
1601939	AAATATTT-AAATATTT-AAGTATTT	Design primers
1603697	AAAAATAAAATAAAAACAAAAAGAA	Design primers
1739855	ATAGTATT-TTAGTATT-TTAGTATT	Design primers
1754184	TTTTTTTGTATTCTTTTTTATATTTTTGTA	Design primers
1763971	TAAAAAGTTCTTAAAAGCTCTTAAAAGCTC	Design primers
1825004	TATTAAATTATATTTAAATAAATTAAATTA	Design primers
1834073	GTATACATTATGTATACAAAATGTATACAGTCT	Design primers
1849573	TTGTAGGTTTTTGTATGATTTTGTAGGTTC	Design primers
2233798	ACCGAAACAGGAGGAACTGGAACAGGAGGAACTGGAACAGAAGGA	Design primers
2233844	CTGGAACAGAAGGGACTGGAACAGGAGGGACTGGAACAGGAGGAACTGAAACAGAAGGGACTGAAACAGGAGGAACTGGAACAGGAGGAA	Design primers
2233943	AAAAAC-CAAAAC-CAGAAC-CAAAAC-CAGAAC-CAAAAC	Design primers
2352066	AAGAAGCAAGAAGAACAAAAGAAACTAGAAGAGCAAAAGAAACAAGAAGAAGAAAAGAAACAAAATGAACAA	Design primers
2359868	CAAATGGAA-CAAATGGAA-CAAATTGAA	Design primers
2399090	GAAATAAAAAATAAGAAATAAGAAATAAGAAATAG	Design primers
2447508	GGTGGGACCAGTAAAGCC-TGTGGGACCAGTAAAGCC-TGTGGGACCAGTGATGCC	Design primers
2447563	GTAGGACCAGTGATGCCT-GTAGGACCAGTGATGCCT-GTAGGCCCGGTGATGCCT-GTAGGTCCAGTGATGCCT	Design primers
2448172	GCAACAGGAGCAACGGGAGCAACAGGAACAACAGGA	Design primers
2448228	AATGGGAACAACGGGAACAACGGGAAC	Design primers
2448259	GGAACAACAGGAACAACGGGAGCAACA	Design primers
2448287	GAGTAACGGGAGTAACAGGAGTAACGG	Design primers
2448322	GGAACAACAGGAACAACGGGAGCAACA	Design primers
2448350	GAGTAACGGGAGTAACAGGAGTAACGG	Design primers
2448385	GGAACAACAGGAACAACGGGAGCAACA	Design primers
2448413	GAGTAACGGGAGTAACAGGAGTAACGG	Design primers
2448448	GGAACAACAGGAACAACGGGAGCAACA	Design primers
2448476	GAGTAACGGGAGTAACAGGAGTAACGG	Design primers
2448511	GGAACAACAGGAACAACGGGAGCAACA	Design primers
2448539	GAGTAACGGGAGTAACAGGAGTAACGG	Design primers
2448574	GGAACAACAGGAACAACGGGAGCAACA	Design primers
2448602	GAGTAACGGGAGTAACAGGAGTAACGG	Design primers
2448637	GGAACAACAGGAACAACGGGAGCAACA	Design primers
2448665	GAGTAATGG-GAACAACGG-GAACAACGG-GAACAACGG-GAGCAACAG-GAACAACGG	Design primers
2450301	CAACAGGTCCAACAGGCCCAACAGGTC	Design primers
2450404	AGCAGGAGCAACAGGTCCAACAGGAGCAACAGGAGCAACAGGAGCAGCAGGTCC	Design primers
2450485	AGCAGGAGCAACAGGTCCAACAGGAGCAACAGGAGCAACAGGAGCAGCGGGTCC	Design primers
2450574	CAACAGGAGCAACAGGCCCGACGGGAGCAACAGGTCCAACGGGAGCAACAGGCC	Design primers
2460391	AAAAAGAAGAAGAAAAAAAGAAAG	Design primers
2576813	ATTATTATTTTATTATATTGTTAT	Design primers
2778131	ATAAATATAAACATGAATATAAAT	Design primers
3043165	TTTTTTTATATTTTTATTTTTTTC	Design primers
3096803	CAATATACATCAATATCCAACCAAATACAT	Design primers
3211011	TT-AT-AT-TT-TT-AC-AT-TT-TT-GT-AT-TT	Design primers
3226518	GCTCCTGTTGCTCCGGTTGCTCCTGTT	Design primers
3227307	GTCGCTCCGGTTGCTCCGGTCGCTCCG	Design primers
3228197	ACCTGTCGGACCTGTTGGACCTGTTGG	Design primers
3229224	TATTCCTTGTATGCCTTGCATTCCTTG	Design primers
3230467	ATTCCTTGTATTCCTTCTAATCCTTGT	Design primers
3556206	GGTGCTACTGGTGCTACCGGTGCCACT	Design primers
3556818	GGTGCTACT-GGTGCTACT-GGCGCTACT	Design primers
3565498	CAACCATAAACATTCATAAATAACCAAAAACAATCACAAA	Design primers
3635788	TTGTTCCTCTTTCTTCGGTTCTTCTTTCTTTGGTTCCTCTTTCTT	Design primers
3698533	CAATTCCAACTCCAATTGCAATTG	Design primers
3798791	TCCTT-TTCTT-TTCCT-TTTTC-TTTTT-TCTTT-TCTTT-T	Design primers
3831535	CAAGTGCAAGTCCAACTGCAAGTC	Design primers
3853506	TCACAACCACAATCTCAATTACAA	Design primers
3896632	ACTTTTTGAACATTTATTGAACTTTTTTTGAAC	Design primers
3980974	TGCTCTGCAACTTGCATTGCAACTTGCTCTCCAATT	Design primers
4015355	CCTGTTCTT-TTAGTTCTT-TTAGTTCTT-TTAGTTCTT-TTAGTTCTT-TTAGTTCTT-TTAGTTCTT-TTAGTTCTT	Design primers
4058104	TATATACCTTATATATACAGTATATACACATTA	Design primers
4113717	CAGCAACAATACCAACACCAATACCCGCAACAATAT	Design primers
4114111	AAAAAAAAAGAAAAAGAAAAAAAAT	Design primers
4245218	CTTCTTCTTCATCCTCTTCTTCTG	Design primers
4280964	TCTTCTATTTCCTCTTCTTCTACTTCCTGCTCTTTTCTTTCTTCT	Design primers
4337630	TCCTGTTGGGCCTGTTGCTCCTGTTGGACCTGTTGCTCCTGTTGAACCTGTTAC	Design primers
4338026	TCCTGTTGGGCCTGTTGCTCCTGTTGGACCTGTTGCTCCTGTTGAACCTGTTAC	Design primers
4338755	TCCTGTTGATCCTGTTGCTCCCGTTGATCCCGTTGA	Design primers
4338837	CCTGTTGATCCTGTTGCTCCCGTTGATCCCGTTGAT	Design primers
4354029	CTTGGTTATTGTTTCCACCTTGGTTGTCATTTCCACCTTGGCTATCGTTTCCGCCCTGGTTGTCGTTTCCACCTTGGTTGTTGTTTCCAT	Design primers
4354522	GCCTTGGTTATTGTTTCCACCTTGGTTTTCGTTTCCGCCTTGGCTATCGTTTCCGCCCTGGTTGTCGTTTCCACCTTGGTTGTTGTTTCC	Design primers
4355017	GCCTTGGTTATTGTTTCCACCTTGGTTTTCGTTTCCGCCTTCGTTGTTGTTCCCACCTTGGTTATTGTTTCC-GCCTTCGTTGTTGTTTCCACCTTGGTTTTCGTTTCCGCCTTCGTTGTTGTTCCCACCTTGGTTATTGTTTCC-GCCTTCGTTGTTGTTTCCACCTTGGTTTTCGTTTCCGCCTTCGTTGTTGTTCCCACCTTGGTTATTGTTTCC-GCCTTCGTTGTTGTTTCCACCTTGGTTTTCGTTTCCGCCTTCGTTGTTGTTCCCACCTTGGTTATTGTTTCC-GCCTTCGTTGTTGTTTCCACCTTGGTTTTCGTTTCCGCCTTCGTTGTTGTTCCCACCTTGGTTATTGTTTCC-GCCTTCGTTGTTGTTTCCACCTTGGTTTTCGTTTCCGCCTTCGTTGTTGTTCCCACCTTGGTTATTGTTTCC-GCCTTCGTTGTTGTTTCCACCTTGGTTTTCGTTTCCGCCTTCGTTGTTGTTCCCACCTTGGTTATTGTTTCC-GCCTTCGTTGTTGTTTCCACCTTGGTTTTCGTTTCCACCTTCGTTGTTGTTTCCACCTTGGTTTTCGTTTCC-ACCTTCGTTGTTGTTTCCACCTTGGTTTTCGTTTCCACCTTCGTTGTTGTTTCCACCTTGGTTTTCGTTTCC-ACCTTCGTTGTTGTTTCC	Design primers
4357252	TCGCTTCTTTATTTGCTTCTTTACTCTCTTCTTTTT	Design primers
4380132	ACTTCTTTTTCTTCTTTTACTTCTTCT	Design primers
4497198	CTTCTACTTCTTCGACTTCTTCTGCTT	Design primers
4497270	CTTCTACTTCTTCGACTTCTTCTGCTT	Design primers
4497342	CTTCTACTTCTTCGACTTCTTCTGCTT	Design primers
4497414	CTTCTACTTCTTCGACTTCTTCTGCTT	Design primers
4497486	CTTCTACTTCTTCGACTTCTTCTGCTT	Design primers
4497558	CTTCTACTTCTTCGACTTCTTCTGCTT	Design primers
4497630	CTTCTACTTCTTCGACTTCTTCTGCTT	Design primers
4497702	CTTCTACTTCTTCGACTTCTTCTGCTT	Design primers
4531204	TTCCCGTTGGACCTGTATTTCCGGTTGAACCCGTATTTCCCGTTGGTCCTGTTA	Design primers
4539671	TGT-TGG-TAT-TGT-TGG-TGT-TGT-TGG-TGT-TGT-TGG-TGT	Design primers
4539728	TGACCATGTTGACCTTGGTGGCCGTGGTGACCTTGGTGACCTTGGTGACCTTGA	Design primers
4539896	TGACCGTGGTGACCTTGGTGACCTTGG	Design primers
4574998	ACTGGACCCACTGGCATC-ACCGGACCTACCGGCATC-ACCGGACCTACCGGCATC-ACTGGACCTTCTGGCATC-ACCGGATCCACTGGCATC-ACTGGACCTACCGGCATC-ACCGGACCCACCGGCATC	Design primers
4576103	CTACCGGAAGCACTGGACCCACCGGCATCACTGGACCTACCGGCATCACTGGAA	Design primers
4619892	AGGCATGGAAAAGGGTATGGAAAAGGGTATGGAAAA	Design primers
4712040	CTTCCGGCT-CTTTCGGCT-CTTTCGGCT-CTTTCGGCT	Design primers
4717655	ACTTTTACTTCTTCTTTTACTTTTACTTTA	Design primers
4829764	ATAAGAATCTATAAAAAACTATAAAAATTT	Design primers
4868756	ATAACATAAAATAACTTTAAGTAACATAAT	Design primers
4935015	TTTAAACTACTTTAAATTTCTTTAAATCAC	Design primers
4958571	CT-CT-TT-AT-TT-CT-TT-AT-CT-CT-TT-GT	Design primers
4983344	TACTTAGTATATACTCGGTATACACTTAGTATATACTGAGTATA	Design primers
5034790	TATCTTCTTTTTTAGGTGCTTCTTTTTTAGGCTCTTCCTTTTTAG	Design primers
5080527	AACAACAACCAAAATAACAATCAAAACAACAACAAT	Design primers
5130071	TTCTTCGTTTTTCTTTATTTTTCTTCTATT	Design primers
5130117	AT-AA-AA-AA-AT-AA-AA-AT-AC-AA-AA-AA	Design primers
5131364	TTCTTTTCTATACTTTTGTTTTGTT	Design primers
5148830	GCCTTCGCTTTCGCCTTGGCCTTT	Design primers
5149135	TGCCTTCGCCTTTGCTTTGGCCTT	Design primers
5149237	TGCCTTCGCCTTTGCTTTGGCCTT	Design primers
5230448	TTCTTTTTTTCGTTTTTTCCTTTT	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

9191

ATAATATACTATGATATATTATAAA