Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Tsukamurella paurometabola DSM 20162

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
31419	CGACCACGAGCAGGACCACGACGA	Design primers
119352	GCCGAGCATGTTGCCGAGGATGCTGCCGAGCAGGTC	Design primers
164495	CCTGCGGCACCTGCGGCCCCCGCGGCACCTGCGGCA	Design primers
170627	CCGCCGGCGCCGCCGTCGCCGCGG	Design primers
190548	CTCGCCGCGTCCCCAGCCGCTCGCCGCGCGTCCCCAGCCGCTCGCCGCGCGTCCCCGGCCGCT	Design primers
264005	ACGCTG-ACACTG-ACACTG-ACACTG	Design primers
317711	GCGAGGGTGAGGCCGAGGACGAGG	Design primers
327832	GCGGCCTCTGCTGCCTCTGCGGCCGCT	Design primers
340522	CCGCCGCCGCGGTCGCCGACGCCGCCGCGGTCGCCGACGCCG	Design primers
379199	GAAGCCCGCGGCCAAGACCGATGG-CGCGCCCGCGGCCAAGACCGATGG-CGCGCCCGCGGCCAAGTCCGATGG	Design primers
485077	CTGTGCCGGTGCCTGTGCCGGTGC	Design primers
490688	GCGGCCGGGGCCGCGGCCGCGGGC	Design primers
521499	CCCCGGCCGCCGCACACCAGGCCGCTGCACCCGCGGCCGCCGCAG	Design primers
542410	GCCGCGGCAGCGGCCGCCGCGGCG	Design primers
542551	GCGTCG-GCGTCG-GTGTCG-GCGTCG	Design primers
593489	CGAGCTCCAGCTCGAGCGCGAGAT	Design primers
616863	ATCGCCGTGAGCGCCGTGATCGCCGTG	Design primers
705485	GGCGGGGTGGTGCGGCGCGGTGCGG	Design primers
820625	GGCGGCGGCGCCGGTGGCTGCGGC	Design primers
833330	CGGCCGGCTTCGGGGCGGCCGGCTTCTGGGCAGCGGGCTTCTGGGCGGCGGGCTTCTGGG	Design primers
833391	GGCGGGCTTCTGAATGGCCGGCTTCTGGACGGCCGGCTTCTGAAC	Design primers
888875	CACCGGAGGCTCCACCGGGGGCGGCGGAGGCTCCACCGGGGGCGGCGGAGGCGCCACCGGCGG	Design primers
895753	AGGCCGCCGCCGATAAGGTCGCGGCCGATAAGGACGCCGCCGCCA	Design primers
898096	CCGACAAGGCCGCCGCAGACCAGGCTGCCGCCGACAGTGCCGCGG	Design primers
899746	CCGCGGATAAGGCGGCGGCGGACAAGGCGGCTGCCGATAGGGCGGCTGCCGATAAGGCCG	Design primers
899876	GGCGGCTGCGGATAAGGCTGCGGCGGACAAGGCCGCCGCGGATAA	Design primers
900273	AAGGCGGCTGCCGATAAGGCCGCGGCGGATAAGGCCGCGGCGGAT	Design primers
901096	CCGAGAAGGCGGCGGCCGACAAGTCCGCGGCGGATAAGGCGGCCG	Design primers
901665	GGTGGTTCGTCGGGTAGTGGTTCGGCTGGTAGCGGTTCGTCGGGT	Design primers
1043800	TGGTCCTACTGA-CCGTCCTACTGA-CCGTCCTACTGA	Design primers
1071323	TCTCCGTCACCGTCGCCGTCCCCG	Design primers
1098593	GACGACGGTGCAGGCCGGGACGACGGTGCCGGTTGGGACGACGGTGCCGGTTGG	Design primers
1144882	CG-CA-CC-AG-CA-CC-CG-CA-CG-CG-CA-CC-CG-CA-CG	Design primers
1166299	TCGTCGAAGACAGAGGCGTCGAAGTCGGAGGCGTCGAAGGCAGAGGCGTCGAAGGCAGAG	Design primers
1185187	AACCACCTGCAGTGC-CGCCAACTGCAGTGC-CGCCAACTGCAGTGC-CTCCAACTGCAGTGC	Design primers
1265857	GGCTCCGAAGGCGGACGCTCCGAAGGCGGAGGCTGCCAAGGTGGAGGCTCCGAAGGCGGA	Design primers
1265944	GGAGGCGCCGAAGAA-CGACGCCCCGAAGAA-CGACGCCCCGAAGAA-CGACGCCCCGAAGAA	Design primers
1272635	GACGTTGACGTAGGCGTTGACCTT	Design primers
1315841	GCCAGGCCGATATCGGTGCCCCGCCGATATCGGTGCCCCGCCGATGTCGGT	Design primers
1342401	GCTGGACGATCCTGCCGAGCTGCTCGATCCTGCCGAGCTGCTCGATCCTGCTGAGCTGCTCGATCCCGCCGAGCTGCTCGATCCCGCCGA	Design primers
1396175	GCGCCCCCGCCCCCGCCCGCGCCG	Design primers
1524481	CGCCCGAGGCCGACTCCGCCGAGGCCGAGTCCACCGAGGCCGACG	Design primers
1535728	CCGCCGATCCCGACGATCTCGCCGATC	Design primers
1539244	GCGTCG-CCGTCG-CCGTCG-CCGTCG	Design primers
1587284	GGAGCGGCGGGTGCGGCGGGAGCAGCG	Design primers
1587370	GGGAGCTGGAGCGGGCTCGGGAGCCGGAGCCGGCTCGGGGGCCGGAGCCGGCTC	Design primers
1677625	TGACGGTGCCGACCCCGCTGGTGCCGACCCCGCTGGTGCCGACCC	Design primers
1690290	CGGCCCCGTCGGCCTCGTCGGCCTCGT	Design primers
1733666	GATCGCCATCGCGATCGGCATCGC	Design primers
1770987	GGACCCCGACCCGGACACCGACCC	Design primers
1860509	GGCGGCGGCGCCGGAGGCCGCGGC	Design primers
1879370	AACTCGCGTGACCTCGGGTGCACCCGCGTG	Design primers
1940892	TCGGCG-TCGGCG-TCGACG-TCGCCG	Design primers
1966240	CTTGGCCGGAGCCTTCTTAGCGGGAGCCTTCTTCGCCGCGGCCTT	Design primers
1966309	CTTGGCGGGAGCCTTCTTGGCCGCCGCCTTCTTCGCTGGTGCCTTCTTGGCGGTGGTCTTCTTGGCGGGGGTCTC	Design primers
2015142	CCATCAACATCACCATCTCCACCA	Design primers
2018488	ACGCCGCGCGAGCGGCACACGAAGTGCGAGCGGCACACGAAGTGCGAGCGGCAC	Design primers
2330705	CCGGCTCGGCGG-TCGGCTCGGCGG-TCGGCTCGGTGG	Design primers
2354310	CGAGCCTCAGACGGGGCCTCAGACAGGGCCTCAGAC	Design primers
2372961	CCGAGCCCGAGAGCGAGCCCCAGC	Design primers
2392918	GGCGAGGACCTCGGCGAGGGCGTCGACGAGGACGTC	Design primers
2397278	GCTGCGTCCGGTGGTGCTGCTGCCGCTGGTGCTGCCGCCGGTGGT	Design primers
2399366	GCCCACCGGGACCGAAACCACCCGGACCGAAGCCGCCGGGACCGA	Design primers
2515705	GCTGGCACCCGGGCTGGTGGCAGCCCGGCTTCTGGCGCCCCGGCT	Design primers
2534898	ACGATGGTGCCCTCG-ACGATGGTGCCCTCG-ACGATGTCGCCATCG	Design primers
2633152	GCCGACGAGGCCGGCGAGGTCGACGAG	Design primers
2732793	CGACTCGGATGCCGCCGACTCGGGTGTTGCGGACTCGGGTGCCGA	Design primers
2838059	GCCTGGGTCTGCGTCTGCGTCGGAGCCTTGGTCTCGGTCTGCGCCGGAGCCTTCGTCTCCGTCTGCGTCGGAGCCTTGGTCTCGGTCTGCGTCGGA	Design primers
2838598	GGT-GGT-CGT-GGT-CGT-CGT-AGT-GGT-GGT-CGT-GGT-CGT-CGT-GGT-GGT	Design primers
2845969	GGTCGCGCCGCGGTGCCGCCGCGGGCGCTCCGC	Design primers
2948414	GCTTGGCAGGAGCCTTCTTCGCAGGCGCCTTCTTGGCGGGGGCCT	Design primers
2948493	GGGCGCGGCCTTCTTGGCCGGAGCCTTCTTGGCCGGAGCCTTCTT	Design primers
2948718	GGGCGCGGCCTTCTTGGCCGGAGCCTTCTTCGCCGCGGTCTTCTT	Design primers
3010013	GCCGGGGTCTTCGCCGGTGTCTTGACCGGGGTCTGC	Design primers
3045455	CGGAGGCGGCGGCGGAAGCGGCGG	Design primers
3087996	GC-GG-GG-GC-AG-GG-GC-GG-GA-GC-GG-GG	Design primers
3090647	CCCCGGCGTACCCCTGCGCACCCCGGCGGA	Design primers
3172118	GCAGGCCCCTAGCGGGAGAGCGACGGTGCGTCCCTCGCGGGAGAGCGACGGTGCGTCCCTCGCGGGAGAGCGACG	Design primers
3223086	ACGAAGACGAACGCGAAGACGAAG	Design primers
3304214	GCTGGA-GCTGGA-GCAGGA-GCTGAA	Design primers
3334587	TCGGTCTCGGGCGCCTCGTCGGTCGCGGGCTCCTCGACGGTCGCGGGCTCCTCG	Design primers
3383569	GAGCCGACGGACTCACCCTCACGGGCGGCATCGGACTCACCCTCACGGGCGGCATCGGACTCACCCTCACGG	Design primers
3388908	GAAGGCGCCGGTGAAGAAGGCGGCGGCGAAGAAGGCCGCCGTGAA	Design primers
3388975	GCAGCGGCCAAGAAGGCGCCCGCCAAGAAGGCCGCGGCCGTGAAG	Design primers
3400872	CCGTATCCCTGGGGCGCCTGGCCATAGCCCTGCGGGGCCTGGCCGTATCCCTGCGGCGCGGGC	Design primers
3426437	GGGCGTCTCGGCGGAGGGCGTCCCGGTCGAAGGCGTCTCGACTGAGGGCGTCTCGGCGGA	Design primers
3442436	CTCCACCGATCCACCGCACCACCG	Design primers
3494325	CAGCACCAGCGCCAGCACCAGCGC	Design primers
3523809	GCGCCCCGTACGGCTGTTGCCCGTACGGCTGCTGCCCGTACGGAT	Design primers
3524668	TCG-CCG-TCG-CAG-CCG-CCG-TCG-TCG	Design primers
3583317	CGGCGGCGGTGGCGGCGTCGACGG	Design primers
3585808	CGCGACGGCACGACGGCGAGACGG	Design primers
3587405	AGGTCCAGGTCGACGTCCAGGGCC	Design primers
3711650	CGGGCCCGGCCGAGCCGGGCCGGAC	Design primers
3768803	CCGGCCGAGACCGCACCGGCCGCGGCAGCACCGGCCGAGACCGCACCGGCCGCGGCAGCACCGGCCGAGACCGCACCAGCCGAGACCGCACCGGCCGCGACGGCC	Design primers
3805874	CCGCCGCCGTCGCGGCCGCCGCCG	Design primers
3904240	GACGCCGACGACGACGCCTACGCC	Design primers
3920546	CCGCCGTCGCCGCCGCGGCCGACG	Design primers
3965987	GGCCACAGCCACGGCCTCGGCCAC	Design primers
3989843	GCGCCG-GCGCCG-ACGCCG-ACGCCG-ACGCCG	Design primers
3999217	GGCCGCCTTCTTCGCCGGTGCCTTCTTCGCGGCCGTCTTCGTGGCGGTGGTCTTCTTCGCGACCGCCTTCTTCGCGGCGGCCTTCTTCGCCGGCGCCTTCTTGGCGGGCGCCTTCTTGGTGGCCTTCTTCTTCAC	Design primers
4039393	CGGCATCGGCCTGGGCATCGGCCT	Design primers
4039427	ATCGGATTCGGAATCGGCATCGGC	Design primers
4040593	CGCCGCCGCCACCGCCGACGCGGC	Design primers
4045581	CATCGAGCGGCTCGGGGTCGAGCGGTTCGGGTTCGAGCGGTTCGG	Design primers
4094247	ACCCGATGCCCGGCC-ACGCCATGTCCGGCC-ACACGATGTCCGGCC-ACACGATGTCCGGCC-ACACGATGTCCGGCC	Design primers
4101809	CAGCAGGGCGGATACCAGCAGGGCGGGTACCCGCAGGGTGGCTAC	Design primers
4113163	CT-CG-GG-CT-CC-GG-CG-CG-GG-CG-CG-GG	Design primers
4143309	TCCGGCTCAGGCTCCGGCTCGGGC	Design primers
4153374	CACCGACCTCACCGGCACCGGCATCACGGGCACCGTGCTCGCCGG	Design primers
4159585	GCCGCGGCGGGATCG-AGCGCAGCGGGATCG-AGCGCAGCGGGATCG-AGCGCGGCGGGATCG	Design primers
4169914	CGGCGGCCGCGGCGGCGTCGGTGG	Design primers
4181804	GCCGCCGCCGACGACGCCTCCGCC	Design primers
4216132	CACCGCAAGACCGCGCAAGACCCCGCAGGA	Design primers
4278843	ACCGCGACCGCAACTGCGAACGCG	Design primers
4290757	ACCCGCCCCCGCACCGGCGCCCGC	Design primers
4315757	CGCCGCCGCCACAGCCGCCACCGC	Design primers
4318124	GCCGACGCGGACGCCGATGCCGAG	Design primers
4323944	TCGGTGACTTCGGTGGCGGTGACTTCGGAGGCGGCGACTTCGGGG	Design primers
4352805	CGCCGTCGCCTTCGCCGCCGCTGT	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

31419

CGACCACGAGCAGGACCACGACGA