Microsatellites /Tandem Repeats database

Genome: Bordetella parapertussis Bpp5

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
69393GC-CG-CG-AG-CG-AC-CG-CG-CG-CG-GG-CG-CG-CG-CGDesign primers
74600CCGCCCCGCAGCGCCCCGCGCCGCADesign primers
171789GCTGGCCGGCTGGCTGGCCGGCCGDesign primers
183918TCATGG-CCGTGG-CCGTGG-CCGTGG-CCATGG-TCGTGGDesign primers
211462TCGCGTTGGGGACGGTCGCCGAAGCTGCGCTGGGGGCGGTCGCCGAAGTCGCGTTGCGGACGGTCACCGAAGTCGCGTTGGGGACGGTCGCCGTAGGGGCGCTGGGGCCGGTCGCCGAAGTCGTGCTGGGGGCGGTCGCCGTAGDesign primers
230362CAGGATCAGGAACGGGATCAGGATDesign primers
245729GGCGC-AGCGC-GCCGC-GCCGC-AGCGCDesign primers
259485CGCGGCGCAGCCCGGCGCGCCGCAGDesign primers
276791ACGGCCGCGCGCACGCCCGGGCGCAGCGCCGCGCGCDesign primers
287814GGGGCGATGGGGGCGGTGGGGGCGATCDesign primers
354039CGGCGCCGTCGCCGGCGCCGGCGACGGCGTDesign primers
428237CGGCGCGCCGCTGCGCGGCGCGGTGDesign primers
457713GCC-GCC-GGC-GCC-GGC-GCC-GGC-GCCDesign primers
550990CAGCGGCACCGGCAGGGGCAGCCGDesign primers
658595CCGCGACGCGGCGCGCTGCGCCGCGDesign primers
680718GGGCGCGCGAGGGCGCGCCGGAGCCCGCGADesign primers
681343GAGCTGGGGCTGGCGCTGGACCTGDesign primers
697192GCGCTGGGGCTGGTGCTGGCGTTGDesign primers
717314CAGGATGCCGGCCAGCAGGCCGGCCGCGATGCCGGCDesign primers
725493CGCACTGCTGGCCGCCTGCCTGCTGGCCGCCTGCCTGCTGGCCGCDesign primers
727561TGGCGGCCA-CGGCGGCCA-CGGCGGCCADesign primers
733997TGCTGG-CGCTGG-CGCTGG-CGCTGG-CGCTGGDesign primers
757082CCGCGCCGATGGCCGCGCCGTTGACGGCGGCGATGGDesign primers
763674GACCAGGGCGCTGAACAGGGCGGTGAACAGGGCGGTDesign primers
784055GGGCGGCCGGCCGGCCGGGCGGCGDesign primers
789735TGC-TGC-TGC-CGC-CGC-TGC-TGC-CGC-TGC-CGCDesign primers
791202CGGCGGGCGCGGCGGGCTCGGGGGGCGDesign primers
814913CCGAGG-CCGAGG-CCGCGG-CCGAGCDesign primers
819607CGCCCGCCACGTCCGCCACGTCCGCCADesign primers
821361TTGTGCGACGCTAGTGCGACGCTAGTGCGGCGCDesign primers
848322CGCCAA-GGACAA-GGGCAA-GGGCAA-GGGCAA-GGGCAA-GGACAA-GGACAA-GGACAA-GGACAA-GGACAA-GGGCAADesign primers
921880TCGCCGTCACCGTGGCCGGCGCCGDesign primers
922268GCTGCTGCCGCTGCTGGTGCTGCCDesign primers
947357GGCCCAGGCGCAGGCGCAGGCCGADesign primers
971191GTGCCGCCG-ATGCCGCCG-ATGCCGCCGDesign primers
973747ATTTTGTTC-GTTTTGTTC-GTTTTGTTCDesign primers
975499GCGCGGCCCGGCGCCGCGCGGGGCGDesign primers
1004820GCAGGGTGCG-GCAGGGTGCG-GCAGGGGCCGDesign primers
1023789GACCTGCCCGCG-GACCTGCCCGCG-GACGTGGCCGCGDesign primers
1075059CTGTCGCGGCCTGCCGCGCCTTGTCGCGACDesign primers
1161167GCCAGTTGGCGGCATTTGGCAGCAGTTGGCDesign primers
1179556CGCTGGTGCTGGCGCTGCTGCTGGDesign primers
1184656CGTCCTCGT-CGTCCTCGT-CGTCTTCGT-CGTCTTCGTDesign primers
1239595GCATAG-CCATAG-TCATAG-TCATAGDesign primers
1251640GCGGCCGCTGCCGCGACCGCGGCTDesign primers
1252899GGGGCGGGGGAGGGGGCGGCGGCGDesign primers
1369702GCCAGCGCCGCCACCGCCGCCAGCGCCDesign primers
1469535GCCAGCGCCGGCGCCAGGCCCAGCDesign primers
1469726CGCCAGCCCCAGCGCCACCGCCAGDesign primers
1502533ATTCAGACTCAGGTTCAGATTCAGDesign primers
1503516GGCCCTGGCGCTCGCCCTGGCGCTDesign primers
1504248CGGCGC-TGGCGC-CGGCGC-CGGCGCDesign primers
1520962GCGCTGGCCCTGGCGCTGGCGCTGGCGTTGDesign primers
1543869CGCTGGCGCCGAGCGGGCGCCGCGCTGGCGCTGDesign primers
1649630GTGCTG-GTGCTG-CTGCTG-GCGCTGDesign primers
1654737GCGCCGCCCGAGCCGCCCGAGCCGCCCDesign primers
1660735TGCTGATGCTGGCGCTGATGCTGGDesign primers
1693252GGCGCTGGCCCTGGTGCTGGCGGTDesign primers
1720373TCTTGGCGGGAGCCTTGGCAGGAGTCTTGGCAGGAGTCTTGGCGGCGGDesign primers
1751009AGCGTCCCTGGC-AGCGCCCAGGGC-AGCGGCCCTGGC-AGCGGCCCTGGC-AGCGTCCCAGGC-AGCGGCCCTGGCDesign primers
1751082GCGGCACTGGCA-GCGGCCCTGGCA-GCGGCCCTGGCA-GCGGCACTGGCA-GCGGCCCTGGCA-TCGGCACTGGCA-GCGGCCCTGGCADesign primers
1751167CGTCCCAGGCAG-CGTCCCAGGCAG-CGTCCCAGGCAG-CGGCCCTGGCAGDesign primers
1751216GGCACTGGCAGC-GGCCCTGGCAGC-GGCCCTGGCAGC-GGCCCTGGCAGC-GGCACTGGCAGC-GGCCCTGGCAGC-GGCACTGGCAGC-GGCCCTGGCAGCDesign primers
1751313TACCAGGCAGCG-TCCCAGGCAGCG-TCCCAGGCAGCG-GCCCAGGCAGCG-TCCCAGGCAGCGDesign primers
1751376CTGGCAGCGGCCCTGGCAGCGTCCCAGGCAGCGTCCCAGGCAGCGGCACTGGCATCGGCACTGGCAGCGGCCCTGGCAGCGGCACTGGCAGCGTCCDesign primers
1752301TCTCGCGCCGGCCAGGTTCGCGCGGGCCAGGTACGCGCCGGCCAGGTTCGCGCCGGCCAGGTTCGCGCGGGCCAGGTCCGCGCCGGCCAGGTCCGCGCCGGCCAGGTTCGCGCAGGCCAGGTTCGCGCGGGCCAGDesign primers
1752437TCCGCGTCGGCCAGGTACGCGTCGGCCAGGTACGCGTCGGCCAGGTACGCGCGGGCCAGGTACGCGTCGGCCAGGTTCGCGCCGGCCAGGTTCGCGCGGGCCAGGTTCGCGCGGGCCAGGTTCGCGCCGGCCAGGTCCGCGTCGGCCAGGTACGCGTCGGCCAGGTTCGCGCCGGCCAGGTTCGCGCCGGCCAGGTCCGCGCGGGCCAGGDesign primers
1809290GCGGTGGCGGAGGTGGTGGCGGTTDesign primers
1845323TGCTGG-TGCTGG-CGCTGG-TGGTGGDesign primers
1846027CTGGCGCTGGTGGCGCTGCTGGCGGTGDesign primers
1846062GGCGGTGGCCGTGGCGCTGGCGGCDesign primers
1859596CGAGAAGGCCGACAAGGCCGAGAAAGCDesign primers
1902356TCG-CCG-TCG-GCG-CCG-CCG-GCG-CCGDesign primers
1952531GCCGCGACCGCGACCGCGGCCGAGDesign primers
1995815CGCCCAGGCGCGCCCGCGCGCGCTCGGGCGDesign primers
2022210GCCCGCGCCGGCGTGCGCCGGCCTGCTCCGDesign primers
2037202CGAGCC-CGAGCC-CGAACC-CGAGCCDesign primers
2037253GCCCAA-GCCCAA-GCCGAA-ACCCAADesign primers
2041395GTGGCGCTGGTGGTGCTGGTTGCGCTGDesign primers
2101929TGGCCCTGGCGCTGGCCGTGGCACDesign primers
2116657TTCGCA-GTCGCA-GTCGCA-GTCGCADesign primers
2149947AGGCGC-TGGCGC-TGGCGC-AGGCGCDesign primers
2162538GCGGCCGCGGGCGCGGCGGCGGCCDesign primers
2172692CGGCGGCGGCCGGGGCGGCGGCGGDesign primers
2191441CCGAGGCCGCGGCCAAGGCCAAGGDesign primers
2193677CTGCTGCTGCTGCTGGTGCTGCTGCTCDesign primers
2201118CCGGCGCTGACGGCAAGCCAGGCGCCGACGGCAGGCCAGGCGCCGACGGCAAACCCGGGGCCGACGGCAAACDesign primers
2205545GGGGCGATGGGGGCGGTGGGGGCGATCDesign primers
2210507GCGCCAGCGCCGCCGCCAGCGCAADesign primers
2212350CGT-CGT-CGT-CCT-CGT-CCT-CGT-CGTDesign primers
2259030AGCGTCCCTGGC-AGCGCCCAGGGC-AGCGGCCCTGGC-AGCGGCCCTGGC-AGCGTCCCAGGC-AGCGTCCCAGGCDesign primers
2259103GCGGCCCTGGCA-GCGGCACTGGCA-GCGGCCCTGGCA-GCGGCCCTGGCA-GCGGCCCTGGCA-GCGGCACTGGCA-GCGGCCCTGGCA-TCGGCACTGGCA-GCGGCCCTGGCA-GCGTCCCAGGCA-GCGTCCCAGGCA-GCGGCCCTGGCA-GCGGCACTGGCA-GCGGCCCTGGCA-GCGGCCCTGGCA-GCGGCACTGGCA-GCGGCCCTGGCA-GCGGCACTGGCA-GCGGCCCTGGCADesign primers
2259332CGTACCAGGCAG-CGTCCCAGGCAG-CGTCCCAGGCAG-CGGCCCAGGCAG-CGTCCCAGGCAGDesign primers
2259397CTGGCAGCGGCCCTGGCAGCGTCCCAGGCAGCGTCCCAGGCAGCGGCACTGGCATCGGCACTGGCAGCGGCCCTGGCAGCGGCACTGGCAGCGTCCDesign primers
2260322TCTCGCGCCGGCCAGGTTCGCGCGGGCCAGGTACGCGCCGGCCAGGTTCGCGCCGGCCAGGTTCGCGCGGGCCAGGTCCGCGCCGGCCAGGTCCGCGCCGGCCAGGTTCGCGCAGGCCAGGTTCGCGCGGGCCAGDesign primers
2260458TCCGCGTCGGCCAGGTACGCGTCGGCCAGGTACGCGTCGGCCAGGTACGCGCGGGCCAGGTACGCGTCGGCCAGGTTCGCGCCGGCCAGGTTCGCGCGGGCCAGGTTCGCGCGGGCCAGGTTCGCGCCGGCCAGGTCCGCGTCGGCCAGGTACGCGTCGGCCAGGTTCGCGCCGGCCAGGTTCGCGCGGGCCAGGTTCGCGCGGGCCAGGTTCGCGCGGGCCAGGTTCGCGCCGGCCAGGTCCGCGTCGGCCAGGTACGCGTCGGCCAGGTTCGCGCCGGCCAGGTTCGCGCCGGCCAGGTCCGCGCGGGCCAGGDesign primers
2298231CAAGGGCCCAAGGGGCCAAGCGCCDesign primers
2358571GCGGTGGCGGCGGCGGTCGCGCTGDesign primers
2370397CGCGG-CGCCG-CGCGG-CGCGG-CGTGGDesign primers
2382753GGCGGCGCGGCCGGCGCGGGCCGCGCGDesign primers
2385558GGTGCTGCTGGCCGGGCTGCTGGCGGCGCGGCTGGCDesign primers
2392580GCGTGGGCGCGGCCGTGGGCGTGGDesign primers
2417911AGCGTTCAACATCGTTCAGCGTCGTTCAACDesign primers
2508737CCA-GCA-GCA-GCA-CCA-TCA-GCA-GCADesign primers
2511120AGCAGGGGCAGGATCAGGGGCAGGDesign primers
2552862TGCCATGGTCGTGGGCATGGTCGTGGGCATGGTCGTDesign primers
2572046CCTGTCCCCGCGGGGACAGGCACCTCTGCCGCAGCGGGGACAGGCACCCTTGCCGCAGCGGGGACAGGCACCDesign primers
2592066CGGTCC-CGGCTC-CGGCCC-CGGCCC-CGGCGC-CGGCGC-CGGCTC-CGGCTC-CGGCGCDesign primers
2628854CCTGGT-GCTGGT-GCTGGT-GCTGGTDesign primers
2656089TGGCGCTGCTGGGGCTGCTGGCGCTGCDesign primers
2707830CGGCCAGCCCCACGGCCAGCATCACCGCCAGCCCCGDesign primers
2727269GCGGCGCCGGCGGCGGTGCCGGCGDesign primers
2763622CCGCCGCCGCGGCCGCCGCCACCGDesign primers
2777732GACCCCGTC-CACCCCGTC-CACCCCGTCDesign primers
2801141TGACGGCCGGCCGCGATATCCAGGCCGGCCGCGATATCCAGGCCGGCCGCGATADesign primers
2816733CCGCCGCCTCCGCCGCCCGCGCCGCCGCCGDesign primers
2826767TCGCCAGCGCCAACGCCAGCGCCADesign primers
2858740GGCGCGCCACAGCGCGCCTCGGCGCGTCAGDesign primers
2936466GGCCTT-GGGCTT-GGGCTT-GGGCTT-GGGCTTDesign primers
2962582TGCTGGTGCTGACGCTGGTGCTGCDesign primers
2973624CACGCCCACGTCCAGGCCGACGCCDesign primers
2995089TGCGCCTGCTCCAGCGCCAGCGCCDesign primers
3010163CTGGGCATCCTCGGCATCCTGGCCATCDesign primers
3010605CCGCGCCGCCGGCGCCGCCCGCGCCCCCCGCCCCGCDesign primers
3055875GCGCTG-GCGCTG-GGGCTG-GCCCTG-GCGCTGDesign primers
3079171GCGCGCGCCCGCGCGCGTGCGCGGDesign primers
3085237CCGGCCAGC-TCGGCCAGC-TCGGCCAGCDesign primers
3096915CGCCGGCGACGGCGCCAGCGCCCGDesign primers
3134913TGTACCGCCACTGTACCGAAACTGTACCGACGCDesign primers
3178107GGCGCGGCCTCGGCGGGCGCGGTCTCGGCAGGCGCGGCGGCGGAGDesign primers
3230506CGCGG-CGCGG-CGCTG-CTCGG-CGCCGDesign primers
3244673GCCTCGTCGGCGCCGGCTTCGCCGGCGGCGGCCGCGTCGCCGCGGDesign primers
3245396CCTCGACCGCATCGACCGCCTCGACCADesign primers
3246209CGACAAGAGCGGCGACAACAGCTGCAACAACAGCGGDesign primers
3257561CGATGTCGCTGTCGGTGTCGGTGTDesign primers
3294326CCAGCGCCAGCATCAGCGCCACCGDesign primers
3304893GGT-GGC-GGA-GGC-GGC-GGC-GGT-GGC-GGC-GGCDesign primers
3306530GCCCAGGGCGCCCAGCGCGCCCAGCGCDesign primers
3326807CGCCGACGCCGGCGCCTACGCCGGDesign primers
3340433TGTCGTACGGGATGTCGTAGCGGATGTTGGACGGGADesign primers
3341502GGCCGGCGCCTGCTTGGCGGGTTCCTGCTTGGCGGGTTCCTGCTTDesign primers
3372019CGAGGTCGAGTTCGTGGTCGAGGADesign primers
3387729GGCACCTGGGTACCTGGGCACCTGDesign primers
3428523GCGGCGGCCGGCGCAGCAGCAGCGGCGGCGGGCGCTTCGGCAGCGGCGGCAGGCGCCGCAGCADesign primers
3467268ATCTTGTTTTT-CCCTTGTTTTT-CCCTTGTTTTT-CCCTTGTTTTTDesign primers
3467313CCTTGCTTTTC-GCTTGCTTTTC-GCTTGCTTTTCDesign primers
3490575CGGCGGCCGCGGCGGCCGCGCCGGDesign primers
3496390CGCCAGCGACAGCCCCAGCGCCAGDesign primers
3538775ACCCCGGTGGAAACGGCTCCGGTCGAAACGGCCCCGGTCGAAACGDesign primers
3670250CGGGGCCCTGCGGGACCCGGCGTGGCCGTGDesign primers
3675870CCGAC-CTGGC-CTGGC-CTGGC-CTGGC-CTGGCDesign primers
3696613ACCGCGGCCATCGCGGCCACCGCGGCCDesign primers
3709601GGACGC-TGGCTC-AGGCTC-AGGCTC-AGGCTC-AGGCTC-AGGCTC-AGGCTC-AGGCTC-AGGCTC-AGGCTC-AGGCTCDesign primers
3709674GGCTCG-GGCTCG-GGCTCG-GGCTCA-GGCTCG-GGCGCGDesign primers
3719858GGCCAAGAAGGCCTCGGCCAAGAAAGCCCCCGCCAAGACCGCCTCDesign primers
3749795GGCCAGCGCCAGGCCCAGGGCCAGDesign primers
3770159GGCCCAGGCGCAGGCGCAGGCCGADesign primers
3780825CTG-TGG-CGG-CTG-CGG-CGG-CTG-CGG-CGGDesign primers
3781758GCCGCCGGGAACGGCACCGCCGGGAACCGCACCGCCTGGAACCGCACCGCCTGGAACCGCDesign primers
3782535GGCGCCCAG-CGCGCCCAG-CGCGCCCAGDesign primers
3802507CGGCCGCCGCCGCGGGCGCGGCCGDesign primers
3823809GCGCGGGTGCGGGTGCGGGTGCGGGTGCGGDesign primers
3848024CGA-CGC-CGA-TGC-CGC-CGC-CGG-CGCDesign primers
3883134GCGCCTGCGCGTGCGCCAGCGCCGDesign primers
3886119GCGGCGCGCCGCGGCGCCGCCCGGCDesign primers
3904770TGGCCGCGCTGGCGGCGCTGGCCGCGADesign primers
3923056CGCCGCCGCGCGCGGCCACGCGCTGCCGCTDesign primers
3938860CGG-CAC-CGC-CGT-CAC-CGC-CGG-CGC-CGCDesign primers
3956355GG-CG-CG-GG-CT-CG-GA-CG-CG-GG-CG-CGDesign primers
3960944CGC-AGC-AGC-AGC-AGC-AGC-AGC-AGCDesign primers
3963096TGGGTGGCGCAGTGGCTGGCGCAGTGGGATGCGCAGDesign primers
3971021CGGCGGCAGCGGCGACAGCGCCGGCAGDesign primers
3997607GCAGCATGGGCAGCACGGTCAGCATGGDesign primers
4024947CCGCCTCGCCGGCCTCGCCGGCCTCGCDesign primers
4079933GACCATGACCCTGCCCATCACCATDesign primers
4117661CGGCGGCAT-GGGCGGCAT-GGGCGGCATDesign primers
4126158GGCGAGGCGTTCGGGGCGAGGCGTTCGAGGCGAGGCGCTCAGDesign primers
4132662AGCCGGAACCGCAGCCGGAACCTGAACCGCAACCGCDesign primers
4132699GCCCGAACCCGAGCCGGAGCCCGADesign primers
4132942CGCGGCCGAGAAAGCCGCGGCGGAGAAGGCCGCCGCCGAAAAGGCDesign primers
4133089GGCGGCCAAGAAGGCGGCCGCCGAGAAAGCCGCTGCCGAGAAGGCDesign primers
4136846GCGCTGGCCCTGCCGCTGGCGCTGDesign primers
4140158CGG-CCG-CCG-ACG-CCG-ACG-CCG-ACG-CCG-ACG-CCG-ACG-CCG-ACG-CCG-ACGDesign primers
4187166TCGACC-TCGACC-TCGATC-TTGACCDesign primers
4195539GCGCGACGCGGCGGGCCGCGCCGCGDesign primers
4217509CCGACTCGCACG-ACGACTCGCACG-ACGACTCGCAAGDesign primers
4225035TCACCGCGTCGATGATCAGCGCGTTGGTGATCACCGTGTCGACGCDesign primers
4280967CGGCAGCCAAGAAGG-CAGTTGCCAAGAAGG-CAGTTGCCAAGAAGG-CTGTAGCCAAGAAAG-CCGTAGCCAAGAAAG-CCGTAGCCAAGAAAG-CCGTAGCCAAGAAAG-CCGTAGCCAAGAAAG-CCGTAGCCAAGAAAG-CCGTAGCCAAGAAAG-CCGTAGCCAAGAAGG-CCGTCGCCAAGAAGG-CCGTCGCCAAGAAGG-CGCCTGCCAAGAAGG-CGCCTGCCAAGAAGGDesign primers
4281205GAAGCCTGCCGCCAAGAAGCCCGCCGCGAAAAAGCCGGCTGCCAAGAAGGCTGCGCCCAADesign primers
4288992CGTAAGGCGGATCGAAGGGCGGATCGAAGGGCGGATDesign primers
4294230CCACCGCCATCGCCACCACCATCGDesign primers
4353450TGGCGC-TGGCGC-TGGCCC-TGCCGCDesign primers
4361671CCCGCGCC-GGTGCGCC-GGTGCGCC-GGTGCGCC-GGTGCGCC-GGTGCGCCDesign primers
4367934GTGGCCGCG-CTGGCCGCG-CTGGCCGCGDesign primers
4374433GGCCAC-GGCCAC-CGCCAC-GGCCAGDesign primers
4406862CAGCGCCAGGGCCAGCGCCAGCGCDesign primers
4423234GCGGCGCGGCGGCGCCGCGGCCCGDesign primers
4490522CCGTGCCCGCCGCCATGGCCGCCGCCGTGCGCGCCGDesign primers
4599716GCCAGCCCCAGCTCCAGCGCCAGGDesign primers
4774271CCGCCGCTGCCGCCGCCTCCGCCADesign primers
4794473TGCAATGGCTGGCGCAACGGCTGGCGCAACGGCTGGDesign primers
4807008CTTTAC-GTTTAC-GTTTAC-GTTTACDesign primers
4869775GGCGGCGGCGCCAGCGGCGACGGCDesign primers

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