Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Mycobacterium sp. MOTT36Y

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
42356	GCCGAACCAGTCGAACCAGCCGAACCG	Design primers
47676	CGGGGCCGTGGCGGGGGCCGGGGC	Design primers
47832	GGCCGGGGCCTGCGCCGGCGCCGG	Design primers
48397	GCCGGGGCCGCGGCCGGGGCCGGA	Design primers
71328	CGCCGCCGCCCCCGCCGAAGCCGC	Design primers
112616	GTCGCGGCGGTGGCCGCGGCGGTGGCCACGGCGGTG	Design primers
152668	GCAGATGATGCAGGCTCCCATGCAGGCGATGCAGGCCCCGATGCAGATGATGCAGCCGCTGAT	Design primers
157997	CGCCGCCGCCCCCGCCGCCGCCGG	Design primers
166026	CGGGGCGGGGGCCGGGGCCGGGGC	Design primers
180726	GCGTTCTTGGCCGGCGCCTTCTTCGCGGGCGCCTTCTTGGCGGGCGCCTTCTTGGCGGGT	Design primers
206319	CCGCGGCACCGGGCAGGGCGCCCGCGGCGCCCGGCAAGGCACCCGCGGCGCCCGGCAGAGCGC	Design primers
206869	CAGCCCGGGGCTGGTCAAACCGGGGCTCGTCAGGCCGGGGCTGGTCAAACCGGGGCTCGTCAGGCCGGGATTGGT	Design primers
229645	CGCCGCCGCCTCGGCCGCCGCCGA	Design primers
301303	CGGCTACGCCGCGCTTGCGATCGCCGCGGCCGCGCTTGCGATCGCCGCGGCCGCGCTTGCGAT	Design primers
302181	GGCGTCGGCGCCGGCGTAGGCGTT	Design primers
340757	GCCCCCAAGCCCGAGCCGAAGCCCGAACCAAAGCCCGAGCCGAAGCCCGAGCCAAAGCCCGAGCCGAAGGCC	Design primers
358896	TGACGC-GGACGC-GGACGC-GGACGC	Design primers
373187	CCGAACCGCACCGAGCCGGACCGAA	Design primers
398928	CGGCG-CGGCG-TGGCG-CGGCC-CGTCG	Design primers
410621	ATCGCCGGCGATCGCCCGCTGACGCCGGCG	Design primers
454659	CGGCGCGCCGGCGGGCTGGCGCGC	Design primers
459019	CGGGACGAAGCCCGGGACGAATACCGAGACGAAGCC	Design primers
581070	CGG-CGG-TGG-CGG-TGG-TGG-CGG-CGG-CGG	Design primers
599068	GCCGCGGCCGCACCCGCGGCCACG	Design primers
795609	GCTTCCTCGGCGGCCTTCTCCTCGGCGGCCTTGTCCTCGGCGGCC	Design primers
854709	CGGTGCGTGACCCACCCCCTACCGCCGAACGTGACCCACCCTCTACCGCCGAGCGTGGCCCACCCCCTACCG	Design primers
855844	CGTTGGGCGCGAAGGGTGGCGACGCTGGGCGCGGAGGGTGTCAAACGTGGGCGCGAAGGGTGTCGA	Design primers
857277	CGGCGACGGTGACGGCCACGACGA	Design primers
861853	TCCGGCTCCGGGGCCGGCTCCTGC	Design primers
862832	CGTCGACGTCGTCGGCGAAGTCGA	Design primers
924450	GCCGCGGCGCCGCTGCGCCCCGGC	Design primers
932037	GGCGGCCGCGGCGGCGGCGCCGGC	Design primers
938094	GCAGTACGGCCAGTACGGGCAATACGGGCAGTACGG	Design primers
1026580	GATCCGAGCGATCCGATCGATCCGAGC	Design primers
1030413	CCGCCGACGCCGCCGGCGCCGCTG	Design primers
1062411	GCCGCCGGCCGCGCCGCCTCCCGCGCCGCCGCCCGC	Design primers
1221651	CCCCGGTCGACCCGGTCGCCCCGGTCA	Design primers
1257452	CACCGCGGCCATCGCGGCCACCGAGGC	Design primers
1257528	GCGGCGGCGTCGGCGGCCGCGGCC	Design primers
1258276	CCCGCCGCGCCCGGCTCCGCCGCGC	Design primers
1258332	CCCGCCGCGCCCGGCTCCGCCGCGC	Design primers
1279784	CCGGAGGCGGCGGAGCGAACGGCGGCGGCGGAGCGAACGGCGGCGGCGGCGCGA	Design primers
1292328	CCTCGGCCGCGTCGGCCGCCTCGGCCA	Design primers
1303278	CGA-CGA-CGA-CTA-CGA-CGA-CGA-CGA	Design primers
1335355	CGCCGAGGCCGCGGTCGCCGAGTGCGCGGCCGCCGTCGCCGAGGT	Design primers
1341686	TGGCGATCGCGATCGCGATGACGA	Design primers
1356108	CCGAGGAGTCCGACGAGTCCGACGAGT	Design primers
1559766	ACCACCAAGACCACC-GCCACCAAGACCACC-GCCAAGAAGACCACC	Design primers
1569272	GCGGCCGCCGCCGCGGTCGCCGCC	Design primers
1571583	TCGACATCATCGACATCGGCGACATCA	Design primers
1575707	GTCGCCGACGCCGTCGCCGTCGCTGTCGGC	Design primers
1582785	GGACCCGGCGGTCCCGGTGGGCTGGGCGGTCCCGGTGGACCCGGCGGACCGGGTGGGCCCGGCGGTCCCGGT	Design primers
1582858	GACCCGGCGGGGGTGGTCCCGGCGGTGGTGGACACGGCGGCGGTG	Design primers
1596076	GCTGCCGCCCCGGACGCCCCCGCCCCGGACGCCCCCGCGCCGGAC	Design primers
1603569	GACAGCGACGACGACAGCGACACCGACACCGACGAG	Design primers
1605738	TTCGACGACACCGACGACGACTCGGACGACGACTCCGAAGACGACTCGGACGACGATTCCGACGACGACTCG	Design primers
1605894	GACTCCGACGATTCCGACGACTCCGAC	Design primers
1607068	ACGGCGGCAACGGCGGCCGCGGCGGCA	Design primers
1624565	CAGCTGCTGCCCGTGTGAGGTCGCTGCTGCCCGTGTGAGGCCACGGCTGCCCGTGGGAGG	Design primers
1655295	GGCCGGGGGCGGGGCCCGGGTCGG	Design primers
1696849	GACAGTGACGACGACTGGGACGACGACATTGTCGAC	Design primers
1696904	CATTCGAGGACACCAATGACGACCGAGGACACCAATGACGACCGAGGACACCAATGA	Design primers
1836676	CG-GG-CG-CG-GG-AG-CG-AG-CG-CG-GG-CG	Design primers
2022588	CCC-GCC-GCC-GCC-TCC-GCC-CCC-GCC	Design primers
2107011	GGGCCCGGCGGTCCTGGTGGGCCCGGAGGCCCCGGTGGGCCCGGTGGACCGGGT	Design primers
2109158	GGGCCACCCGGGCCACCGGGTCCGCCCGGACCACCGGGTCCACCCGGGTGACCG	Design primers
2109335	GGACCACCAGGACCACCGGGACCGCCAGGACCGCCAGGACCACCG	Design primers
2147962	ACGGGGCGA-GCGCCGCGA-ACGCGGCGA-ACGCGGCGA-ACGCCGCGA-ACGCCGCGA	Design primers
2214847	GCCGACGCGCTGGCCGCCGAGCTGGCCCACTCGCTG	Design primers
2218989	GCGCCGCGGCGCACCACGCCGCCCC	Design primers
2283141	CGGCTGCGCCTGGGGCTGGGGCTG	Design primers
2283540	CTGGGGCTGCGGCTCGGGCTCGGG	Design primers
2292239	CCGGCTCGGGTAG-GCGGCTCGGGTAG-GCAGCTCGGGTAG	Design primers
2304768	GGTCGAGCCGTTGGTCGAACCGTTCGTCGAACCGTT	Design primers
2324182	CAG-CTG-CCG-CCG-CTG-CCG-CCG-CTG-CCG	Design primers
2334344	AGCGCGGCGCAGCCGGGCGCAGCGGGTCGC	Design primers
2458043	CGGCGACTGCGACGGCGGCGGCGA	Design primers
2538294	GGCTGGTGCTGGGCCTGGGGCCGG	Design primers
2542203	GGGGC-GGGGA-CGGGC-CGGGC-GCGGC	Design primers
2542897	CAGTACGGTCAGCCGGGTCAATACGCCCAGCCGGGTCAGTACGGGCAGCCGGGC	Design primers
2544572	GGCCGC-GGCCGC-TGCCGC-GGCCGC	Design primers
2581448	CGCCGGCGCCGCCGACGGCACCGG	Design primers
2588208	CGCCGG-CGTCGG-CGTCGG-CGACGG	Design primers
2646150	CGCCGGCGCTGGCGCCGCCGACGG	Design primers
2814760	ACCTGGATCTGGACCTCGACCTGT	Design primers
2895644	GCGGCGGCGCCGGTGGCGGCGGGG	Design primers
2901143	GACGACCCCGAGGAGGATCCCGAGGAGGAACCCGAG	Design primers
2902485	TCGACGTCGAAGTCGAGGTCGAGGTCGCCG	Design primers
2922369	ATCGAAAGAGTTATCGAAGGAGTTGTCGAGAGAGTT	Design primers
3038641	CCGTGGACGTGGCCCTGGCCGTCG	Design primers
3043272	CTCGCCGCCGGTGGCCGCCGACCGCCGCCG	Design primers
3131359	CACGGCGACATGGACCACCACAACATGGACCACGGCGCGATGGAC	Design primers
3140303	TCGGT-GCGAT-GCGGT-GCGGT-GCGGT-GCGGT	Design primers
3340989	AGTGGCGATCGCCAGCGCGGCCGCGGCGACCGCCAGCCCGGCCGCGGCGACCGCCAGCGCGGC	Design primers
3343855	CCGGCTCAGCAGGCGCCGACACAACAGGCGCCGACACAACAGGCGCCGTTGCAGCAGGCGCCGTTGCAGCAGGCG	Design primers
3487333	GCCCGCCCGGCCAGCCCGGCCCGCCCGGCCCGCCGG	Design primers
3489736	GCACCACCACCAGCAGCAGCACCG	Design primers
3513361	CCGCCGGCGCCGCCCCCGCCGCCG	Design primers
3570855	GGGCGCGCT-GGGCGCGCT-GAGCGCGCT	Design primers
3644442	CACCAGCACCCGCACCGGCATCAG	Design primers
3689145	CCGGGCCGCGCCGGCCCGCGCCGGC	Design primers
3695663	TCGTGG-CCGTGG-CCGTGG-TCGTGG	Design primers
3703774	CGGGCGCGGGCTGCCCCGGGGCGGGCTGGCCGGGCGCGGGCTGGT	Design primers
3729182	CCG-CCG-ACG-CCG-CCG-ACG-CCG-ACG	Design primers
3729227	CCGACGAACCCGACGGACCCGACGGAC	Design primers
3751782	CACCAG-CGCCAG-CGCCAG-CACCAG	Design primers
3784258	TGCTGTTGCCGTTGCTGTTGCTGC	Design primers
3823975	GGATACTCGTCGTCGGCGTACTCGTCGTCCGGATAGCCGGCGTCG	Design primers
3834001	GGCCAAAGAGGCCGAAGAGGCCAAAGC	Design primers
3847190	TCGTCGTCGTAGTCCTCGTCGACG	Design primers
3880206	TGGGCTAA-TCGGCTAA-TCGGCTAA-TCGGCTAA-TCGGCTAA	Design primers
3896941	GCC-GAC-GCC-GAA-ACC-GAC-GAC-GAC-GTC-GAC	Design primers
3911887	CGG-CAT-CGT-CGG-CGT-CGT-CGG-CGT-CGT	Design primers
3914684	GGGTCGGGCTCGGGGTCCGGCTCG	Design primers
3922915	TCGCGG-TCGCGG-ACGCGG-TCGCCG	Design primers
3928804	AGCGCGGCGCAGCCGGGCGCAGCGCGTCGC	Design primers
3943246	CGTCCTCGCCGGCCTCGCCGTCCTTGC	Design primers
3981967	CGGTCCCAGACCGGCCCAGACCGTCTCAGA	Design primers
4005632	GGCCGGCGTTTCGGGCGCCGGGGTCTCGGGCGCCGGGGTTTCGGG	Design primers
4048543	GGCCGGCGCCTTCTTGGCCGCAGTCTTCTTGGCCGGAGCCTTGGT	Design primers
4048647	CTGCGGCCTTCTTGGCGGGAGCCTTCTTGGCCGCGGCCTTCTTGGCGGGAGCCTTCTTGGCCGCAGCCTTCTTGGCGGGAGCCTTCTTGGCCGCGGTCTTCTTGG	Design primers
4065546	CGGTCAGCTCGGCCAGCTCGGCCAGCT	Design primers
4068327	CGCCGCCCCCGCCGCCGCCGCTGC	Design primers
4075886	CGCCGA-CGCCGA-CTCCGA-CGCCAA	Design primers
4102404	CCGGGCGGCGCGGGGCGGGGCCTGGCGGCT	Design primers
4233710	CGTGGTGGTGGTGGTGGTCGTGGT	Design primers
4295086	GTCTCGAGTTCTTCGTTGGTGGACTGCAGTTCCTCGTTGGTGGTCTCGAGTTCCTCGACCGTG	Design primers
4315842	CCGATCGAGCCGATGGAGCCGATCGAA	Design primers
4316847	CCCGCCGCGCCCGGCTCCGCCGCGC	Design primers
4316902	CCCGCCGCGCCCGGCTCCGCCGCGC	Design primers
4401745	CGGTGCCCGCGGTGGCCGTGGTGCCCG	Design primers
4419023	CTCAGAAAATCACGCGGAAAATCACGCGGAAAATCA	Design primers
4486583	TGCTCGCGCTCGTGTTCGTGCTCG	Design primers
4539227	CGACGACATTGACGACGACGTTGACGACGAAGTTGA	Design primers
4576370	CCCCGCGTGATT-TTCCGCGTGATT-TTCCGCGTGATT	Design primers
4582033	CCGGGAATGCCCGGCCAGATCCCGGGGATGGGGGGCCAGATCCCGGGCATGGGGGGCCAGATCCCGGGCATGGCGGGCCAGATCCCCGGAATGACGGGCCAAATCCCGGGCATGGCGGGCCAGATG	Design primers
4592185	TCGGGCGCGGGCTCCGGCGCGGGC	Design primers
4616490	CCGGCCCGGACCGGACAGGCTCGGC	Design primers
4628570	CGCCGCGCCCGCCGCGGCCGTCGCGCC	Design primers
4628735	GGGCGC-GGGCGC-CGGCGC-CGGCGC	Design primers
4641132	CGGCG-CGGCG-CGCCG-CAGCG-CCGCG	Design primers
4739733	GTGGCGGTGCCGGGGGCGGTTGCG	Design primers
4752353	CGTCGTCTTCGTCGTCGACGTCGG	Design primers
4814458	GCCGCGCCGTGACGCCCCGCGCCGG	Design primers
4861656	GCGGCGGGGTTTCCGGCGGGGTGTGCGCCGGGGTTT	Design primers
4865960	ACATCGGCGCCGACCTCGCCGCCGACATCCGCGCCC	Design primers
4900099	ATCGTCGGGGGCATCGTCGTCGGCAGCGTGGGGGGC	Design primers
4928725	CGACGTCGTCGACGACGTCGACGTCGG	Design primers
4930106	GGCGCATACGTCGTCGTCGGGGGTGCGTGCGTGGTCGTCGGGGGTGAATACGTCGTCGTCGGGGGCGAATACGTGGTCGTCGGGGGCGAATACGTCGTCGTCGGCGGCGAGTACGTCGTCGTCGGCGGCGAATACGTCGTCGTCGGGGGCGAATACGTCGTCGTCGGC	Design primers
4930355	ATCGGAATGGGAATCGGAATAGGA	Design primers
4974088	CGATCAAGCCGCCGGAGGTCAAACCGCCGGAGGTCAAGCCGCCGG	Design primers
4974392	GCCCGCCGCTTCGGCGCCCGCAGCTTCGATGCCGGCGGCCTCGGC	Design primers
5001248	CCTTCTTGGCCGCCGCCTTCTTGGCGGGAGCCTTCTTGGCCGGAGCCTTCTTGGCAGGCGCCTTCTTCGCGGGCG	Design primers
5010709	CGACCTCGACATCGACGTCGACCC	Design primers
5039185	GTCCCGGGGTCCAGGGGTCCCGGG	Design primers
5063927	ACG-GCG-GCG-GCG-ACG-ACG-GCG-GCG	Design primers
5084335	CGG-AGG-CGG-CGG-CGG-GGG-CGG-CGG	Design primers
5091679	GCT-GCC-GCC-GCA-GCC-GCC-GCT-GCC-GCC	Design primers
5094840	GGTTTTCCCGCGTCGACCTTTCCCGCGTCGGCCTTTCCCGCGTCG	Design primers
5123699	GCC-GCC-GTC-GCC-GCC-GCC-GGC-GCC	Design primers
5165335	CGATCGCGAGCGCGATCTCGAGCG	Design primers
5169685	ACCGGCACCGGCGGCACGACCGGCACGGGCGGCGCGAGCGGCAGTGGCGGCACG	Design primers
5170977	CGGCCCGGCGCGGGCCGACCAGGCC	Design primers
5180449	GCCGGCGGCGCCTGCGGCGCCGGCGGG	Design primers
5183162	GG-GG-CG-GG-CG-CG-GG-CG-CG-GG-GG-CG	Design primers
5258205	TCGCCGCCGCGCCTCGGCCCGTCTTCGCCGCGCCTTGCCCCGTCTTCGCCTCGCCTTGGCCCG	Design primers
5280875	GGGTGTCGGGTCTCGGGTGTCGGGTCTC	Design primers
5309240	CCGCGTCGCGCAGCGCCGCGACGCG	Design primers
5313855	GAATGGCCCGGGCAACAGCCGGAATGGCAAGGGCAACAACCGGAATGGCAAGGCCAACCGCCG	Design primers
5332633	CAGCACCAGCGCCCGCACCATCACCAGCGC	Design primers
5335646	TCG-GCG-TCG-TCG-CCG-GCG-TCG-ACG	Design primers
5409863	GCCGGCGCCGGTGCCGTCGCGGGC	Design primers
5494224	ACGACGACGACACCGACGCCGACG	Design primers
5543238	GGCCAGGCCCTGCCAGGCCGGGCCG	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

42356

GCCGAACCAGTCGAACCAGCCGAACCG