Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Azoarcus sp. BH72

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
33389	GCC-CCC-GCC-CCG-GCC-GCC-GCC-CCC	Design primers
34139	AGGGG-AGGGT-TGGGG-TGGGG-ATGGG	Design primers
46834	CACCGGCGCCGGCTCCGGCATCGG	Design primers
57696	CCGCCGCAGCAGCCGCCGCAGCACCATCCGCAGCAG	Design primers
57888	CGGCGGCACGGTGGCACGGCGCCA	Design primers
132775	AGGGG-AGGGT-TGGGG-TGGGG-ATGGG	Design primers
261158	GCC-GCC-GCC-CCC-GCC-ACC-CCC-GCC-GCC-GCC	Design primers
261830	AGGGG-AGGGT-TGGGG-TGGGG-ATGGG	Design primers
278670	GGCGCGGCGGCTGCGCGTCGGCGCGGCGGCGGC	Design primers
280881	TCGGCGTCCGCGTGGGCGGCGGCG	Design primers
297056	TGGCGGTGGTGGTGCCGGTGGCGC	Design primers
299193	AGGGG-AGGGC-TGGGG-TGGGG-ATGGG	Design primers
336221	GCTGGCACTGGCGCTGGTGCTGGT	Design primers
350132	TGCGCGTGGGCGTGCGCCTGCGCG	Design primers
358495	GGCGGCGGTGGCGCCGGCGGCGGG	Design primers
367304	AAAGCCGAAAAGGCCGAAAAGGCCGAA	Design primers
370032	GGTGCCGGTGTCGCTGCCGCTGCC	Design primers
376146	AGGCCGATGCCGAAGCCGAGGCCG	Design primers
387153	GCGGCAGCAGCAGCGCCAGCGCCAGCAGCA	Design primers
389078	CGGCGGCGGCGGCGGAGGCCGCGG	Design primers
404905	GTCGTCCTCGTCGTCGCCGTCGTG	Design primers
406249	GCGCCAGCACCAGCACCAGCGCGA	Design primers
424783	GGTGGCGCTGTGGCGCGGCGGCGC	Design primers
443930	GGCTCGGGCTTCTTCGGCTCGGGCTTGGGCGGTTCCGGCTTTTTC	Design primers
450112	CGCTGGCACTGGCGTTGGCGCTGT	Design primers
473051	CCGCGGCCGCGCGCGCGGCCGCCG	Design primers
511757	GCCCCCGCAGCCACG-GCACCGGGAGCCACG-GCACCGGGAGCCACG-GCACCGGGAGCCACG-GCACCGGGAGCCACG-GCACCGGCAGCCACG-GCACCGGCAGCCACG-GCACCGGCAGCCACG	Design primers
512093	GTGCCGGCGGTGCCGCCGGTGCCCGCG	Design primers
542558	GGTCGTGGTCGAGGCCGTGGTGGT	Design primers
577807	GTGATCGCGATCATGATCGTGATC	Design primers
590045	CGTGGTGGTGGTCGTGATCGTGGTCGTGAT	Design primers
628169	CAGCACCAGCGCCAGCACCAGCAC	Design primers
628452	CGCCGCCTCCGCCGCCGTCGCCGCCGCTGCCGCCGT	Design primers
639645	GGCGAAGGCGCAGCCGAAGGCGAG	Design primers
644470	CGGCGGGGCGGGCGGGGCCGGCGGCGC	Design primers
690240	AGGGG-AGGGC-TGGGG-TGGGG-ATGGG	Design primers
690453	AGGGG-AGGGC-TGGGG-TGGGG-ATGGG	Design primers
690772	AGGGG-AGGGC-TGGGG-TGGGG-ATGGG	Design primers
691091	AGGGG-AGGGC-TGGGG-TGGGG-ATGGG	Design primers
739917	GCGCGGTTGCGCGCGGTTTGGCGGTGTTGC	Design primers
924045	GAGCACGAGCGCGAGCAGGAGCAC	Design primers
992517	TCCGCG-CCCGCG-CCCGCG-CCCGCG	Design primers
1012586	CCGGCGCCCGCGCCGGTGCAGGCG	Design primers
1028960	GCAGGGGGCGCCACGGGGCGGGAGGCGGCG	Design primers
1047375	GGGCATGGGCGGCATGGGTGGCATGGG	Design primers
1073021	GCGCTGCCGCTGGCGGTGGTGCTG	Design primers
1076041	GCCGGGGCCGTGGCCGCGGCCGCG	Design primers
1123844	GCGCCGACGCCGGCGGCGGCGCCC	Design primers
1124210	CTCGATTTCGATTTCGATCTGGAT	Design primers
1142999	CCGCCGCCACCGCCGCGGCCGCCG	Design primers
1181854	GGCAGCGGCGGCGTCCTTGGCGGCTTCGGCAGCGTCCTTCGCAGCGTCGGCGGCTTCCTTGGC	Design primers
1209158	AGGGG-AGGGC-TGGGG-TGGGG-ATGGG	Design primers
1244871	CGCCAT-CGCCAT-CACCAT-CGCCAG	Design primers
1256244	AGGGGAGGGCAGGGGTGGGGATGGG	Design primers
1273860	AGGGG-AGGGC-TGGGG-TGGGG-ATGGG	Design primers
1288543	AGGGGAGGGCCGGGGTGGGGATGGG	Design primers
1327846	GCGCCGTGCCACGCCGGGCCGCGCG	Design primers
1404748	ACAGCGGCAGCGTCAGCGACAGCA	Design primers
1409402	GGGCGGGGTGGTGCGGGGCGGGGTG	Design primers
1444657	CGCCGCGGCCGCCGACGCCGCTGC	Design primers
1451764	CGCGAGCGCGCGGGCGAGCGCGAT	Design primers
1496474	AGCCGGGGCCGGAGCAGGAGCGGG	Design primers
1550441	GTGGTCATGGTCGTGGCCGTGGTCGTGGTC	Design primers
1572097	CGGCCGCGCGGGCGCGCGGCCGCC	Design primers
1578298	TCGTGGTCGCGGTCATGGGCGTGG	Design primers
1595429	CGCGAGGGCGAGCGCCAGCGCGAC	Design primers
1600103	GCCGGCGCCCGCGCAGGCGCAGGC	Design primers
1621372	GTCGCTGCCGCCGCCGGTGCCGCCGTCGCCTCCGCCGTCGCTACCGCT	Design primers
1642261	CCGCCAGCGCCACCGCAACCGCTA	Design primers
1694868	GTGGCGGCGGAA-AAGGCGGCGGAA-AAGGCGGCGGAA	Design primers
1694905	AGCCGGCGGAAA-AGCCGGCGGAAA-AGCCGGCGGAAA-AGCAGGCGGAAA-AGCAGGCGGAAA-AGCAGGCGGAAA-AGCAGGCGGAAA-AGCAGGCGGAAA-AGCAGGCGGAAA-AGCAGGCGGAAA	Design primers
1748760	GGCGCGCCGGGGCGCCGACGCGCC	Design primers
1776876	ATCTTCCACCGCAGG-GGCTTCGACCGCAGG-GGCTTCGACCGCAGG-GGCTTCGACCGCAGG	Design primers
1916729	GGCTCCGGTTCCGGCTCCGGCTCG	Design primers
1921276	GGGCTGGCGCTGTGGCTGGTGCTG	Design primers
1928382	CAGCGCAAGCGCCAGCTCCAGCGG	Design primers
1938680	GGTGCGCGACGTGCGCGAGCTGCGCGA	Design primers
1942203	CGCGGCCCCGGCCGGGGCCGCGCC	Design primers
1949262	GTGGCGGGGAGTTGGGGGGATTGGCGGGGC	Design primers
1958749	CGCCGCCCCCGCCGCCGCCGCTGC	Design primers
2011563	GAAGCGGCGAGGCGGCGAGGCGGC	Design primers
2015114	AGGGG-AGGGT-TGGGG-TGGGG-ATGGG	Design primers
2025709	AGGCGAGGGATTCAGGCGCGGGATTCAGGCGCGGGATTCAGGCGCGGGATTCAGGCGCGGGATTCAGGCGAGGGATTCAGGCGCGGGATTCAGGCGCGGGATTCAGGCGCGGGATTCAGACGCGGGATTCAGGCGCGGGATTCAGGCGCGGGATTCAGGCGCGGGATTCAGGCGCGGGACTC	Design primers
2050025	GCACTGCGTTGCACGGCGTTGCATGGCGTT	Design primers
2064171	GAAGTCGAGGTCGAAGGCGAAGTC	Design primers
2097465	TCACCAGCAACACCAGCATCGCCAGCA	Design primers
2101711	CAGCGCGAGCGCCACCGCCAGCGCCTGCGC	Design primers
2112755	AGGGG-AGGGC-TGGGG-TGGGG-ATGGG	Design primers
2116923	GACCTCGATCTCGACCTTGGCCTCGTCCTC	Design primers
2138096	ACCTTCCCCTTCACCGTCGCCTTC	Design primers
2149280	AGGGG-AGGGT-TGGGG-TGGGG-ATGGG	Design primers
2155043	AGGGG-AGGGT-TGGGG-TGGGG-ATGGG	Design primers
2187729	AGGGG-AGGGT-TGGGG-TGGGG-ATGGG	Design primers
2196068	CCTCCTCCCCCTCCTCCCCCTCCC	Design primers
2214767	GATCACGACCACGAGCACGAGCAC	Design primers
2239034	CGGCGGCGGCGTCCGCGGCAGCGG	Design primers
2303413	CGCCCCCGCGACGAT-CGCCCCCGCGACGAT-CGCCCCCGCCGCGCT	Design primers
2329636	GCCGGTGCTGGTGGCGGTGCCGGC	Design primers
2424071	GATCGCCGCGATCGCGGCAATCGCCGC	Design primers
2467104	AGGGG-AGGGT-TGGGG-TGGGG-ATGGG	Design primers
2518082	CGGCGGCGCGCGGACGCGCGTGGCGGCGGG	Design primers
2545322	GCTGGC-GCTGGC-GGTGGC-GCTGGC	Design primers
2562137	CCGCCACCCCCGCCTCCCCCGCCGCCC	Design primers
2568451	CCTCGGCATCATCGGCATCGTCGGCAT	Design primers
2569923	GGCGGTGACGGTGCCGGTGGCGCT	Design primers
2576604	AGGGGAGGGTCGGGGTGGGGATGGG	Design primers
2632005	CC-AA-CC-CC-AT-CC-CC-AC-CC-CC-AC-CC	Design primers
2682912	AGGGG-AGGGT-TGGGG-TGGGG-ATGGG	Design primers
2693534	TGCGGGC-AGCGGGC-AGCGGGC-GGCGGGC	Design primers
2708814	CGCGACCGCTACCGCGACCGGGAC	Design primers
2716825	GCGCGCCGCCGCGCCGGTGCGCCG	Design primers
2725118	CC-GC-GC-CC-GC-TC-GC-GC-GC-CC-CC-GC	Design primers
2733122	GCTCCACCAGCTTCACCAGCTCCGCCA	Design primers
2738653	CGTCGGCGTCGTCATCGGCGGCGG	Design primers
2772720	AGCAGCAACAACCCAACCAGCAACAGCCCGAGCAGCAGCAGACCA	Design primers
2786159	TGCCGG-TGCCGG-TGGCGG-TGCCGT	Design primers
2802118	AGCGCCAGCGCAAGCCCCACCGCC	Design primers
2811449	GCA-GCA-CCA-GCA-CCA-GCA-GCA-GCA-CCA-GCA	Design primers
2835193	GCGCTGCTGGCGCTGCTCGTGCTGCTGGCGCTGCCG	Design primers
2838470	TGCTGCTGCGGCTGCTGATGCTGG	Design primers
2838613	CTGCTGGCCGTAGCCCTGCTGACCAAAGCCCTGCTGGCCATAGCC	Design primers
2838840	GCTGCTGGCCGTAGCCTTGCTGGCCATAGCCCTGTTGCCCGTAGCCCTGCTGGCCCTGGC	Design primers
2878526	CTG-CTG-GTG-CTG-CTG-ATG-TTG-CTG	Design primers
2941110	CCCTGGCACCACGACGCC-CGGTGGAACCACGACGCC-CGGTGGAACCACGACGCC-CGGTGGAACCACGACGCC	Design primers
2941192	ACCACGCCCGGTGGAACGACCACGCCCGGCGGAACGACAACACCCGGCGGAACGACCACGCCTGGTGGGACGATGACGCCCGGCGGAACGACGACGCCCGGTGGAACGACAACACCCGGTGGAACGACCACGCCCGGTGGAACGACGACACCCGGCGGAACG	Design primers
2941596	GAGCGGCGGCGGGACCGGTGGCGGGACCGGCGGTGG	Design primers
3004309	TCGGCCCGCGCCGGCGCGCGTCCGACCGCG	Design primers
3006364	CCGCCGCCGCGGCCGACGCGGCCG	Design primers
3009909	CTGCCGCTGGCGCTGCTGCTGGCG	Design primers
3014896	CGAGCTGGTCGCGCTGGTCGAGCAGGT	Design primers
3049930	CCTCGCCCTCGTGCTCGCCCTTGC	Design primers
3090576	GCC-GCC-GCC-GCA-GCG-GCC-GCG-GCC	Design primers
3144026	GCCCTTGTCCTTGCCCTTGCCCTT	Design primers
3244132	AGGGGAGGGCGGGGGTGGGGATGGG	Design primers
3244436	GCTGGTGCCGGTGCTGATGCTGTT	Design primers
3264027	CGGCGCCAATCTGGCCGGCGCCAATTTCGACGGCGCCAACCTCAC	Design primers
3321110	AGGGG-AGGGT-TGGGG-TGGGG-ATGGG	Design primers
3328024	CGGCGGCAACGGTGGCAATGGCGGCAA	Design primers
3328149	GCGGCGGCGACGGCGGCAACGGCG	Design primers
3328816	GGGCGGCACCGGCGGCACGGGCGGCGC	Design primers
3341459	AGGGG-AGGGT-TGGGG-TGGGG-ATGGG	Design primers
3348471	AACCCC-ATCCCC-ATCCCC-ACCCCC	Design primers
3357258	AGGGG-AGGGC-TGGGG-TGGGG-ATGGG	Design primers
3367802	AGGGG-AGGGC-TGGGG-TGGGG-ATGGG	Design primers
3379726	AGGGG-AGGGT-TGGGG-TGGGG-ATGGG	Design primers
3395056	GCAGCGGCACCGACAGCGGCGGCG	Design primers
3412258	TCGCCGCCCTTC-TCGCCGCCCTTC-TCGCCGGCCTGC	Design primers
3412348	CCGCCCCCGCGCCCGCGCCGGCCC	Design primers
3435808	GCACCG-GCACCG-GTACCG-GAACCG	Design primers
3458198	CG-AA-CG-CG-AG-CG-CG-AG-CG-CG-AG-CG	Design primers
3478024	GAGGCCGATCTGGCC-GAGGACGCGCTGGCC-GAGGACGCGCTGGCC-GAGGACGCGCTGGCC	Design primers
3478096	GACGACGACGCCGACGGCGAGGACGCCGAC	Design primers
3601146	GCGCCAGCACCACCGCCAGCACCA	Design primers
3619720	CGAACGCGAACACGAGCGCGAGCG	Design primers
3694849	GGGAACGGAAGGGGCCGGAAGGAAGCGGAA	Design primers
3722555	GCCAGCGCCACCGGCAGCGCCGGC	Design primers
3723659	GCACCAGCAGCAGCAACAGCACCG	Design primers
3769916	TGCTGGTGCTTGCGCTGGTGCTGA	Design primers
3828022	TCGCCCTCAACCGCTCCCGCCCCCTCAACCGCTCCCGCCCCCTCAACCGCTGCC	Design primers
3919523	CAGCAACAGCACCAGGAACAGCAA	Design primers
3969347	CGCCACCGGCACCGCCACCGCCTC	Design primers
4035137	GCGGCCGCAGCGCCCGCACCGGCCGCA	Design primers
4180193	GCGCG-GCGCG-GCGTG-CCGCG-GCGCT	Design primers
4218570	GCCGCCTCCGCCGCCGTCGCCGCC	Design primers
4246400	CGCCGCCACCGCCGGCGCCGCCGT	Design primers
4308689	CGGCGCCACGCGGCGCACCGCGGCGCCGAG	Design primers
4309907	CGCCTGCACCAGCGCCAGCACCAAGGCCAGCACCAG	Design primers
4317870	GTGCCGGTGGCGGTGGCGGCGCCG	Design primers
4367445	CAGGGT-CAGCGT-CAGCGT-CAGCGT	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

33389

GCC-CCC-GCC-CCG-GCC-GCC-GCC-CCC